Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0499
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   2.0  
At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin, p...    29   2.6  
At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin, p...    29   2.6  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   3.5  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   3.5  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 504  GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 382
            G+ ET++ G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At5g42080.2 68418.m05123 GTP-binding protein / phragmoplastin,
           putative strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin family
          Length = 429

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 612 ISRGTGSLGXFSHLHXKGFTDDMXVNEEVRDRS-RKSGQVETLA 484
           I  GT     F HL  K FTD   V +E++D + R++G+ + ++
Sbjct: 79  IDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAIS 122


>At5g42080.1 68418.m05122 GTP-binding protein / phragmoplastin,
           putative strong similarity to GTP-binding protein
           [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A
           [Glycine max] GI:1218004; contains Pfam profiles
           PF01031: Dynamin central region, PF00350: Dynamin family
          Length = 610

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 612 ISRGTGSLGXFSHLHXKGFTDDMXVNEEVRDRS-RKSGQVETLA 484
           I  GT     F HL  K FTD   V +E++D + R++G+ + ++
Sbjct: 79  IDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAIS 122


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 307 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 432
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 307 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 432
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,194
Number of Sequences: 28952
Number of extensions: 235158
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)