Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0497
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    29   0.44 
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.3  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    27   1.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   5.4  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   7.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.2  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    24   9.5  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    24   9.5  

>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 238 MTVXKDAVXRVWSRRLRFRWHIXTPRKDT 152
           +T  +DAV RVW  R R   H+ +  K T
Sbjct: 263 VTAGRDAVARVWDMRTRQNVHVLSGHKST 291


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 78  INLLGLRCV-RAEPXRTKDENRSSYSVSFRGVXICQRNLSLRLQTRKTASLXTVILG*PH 254
           I+LL  RC  RA P +  ++  + YSVSF    +    +S+     +   L  +ILG  H
Sbjct: 108 ISLLVARCFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLNGLILGNSH 167


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 67  LYISSTYWGYGVFAPNPXAQKMRTVQVILCLFVASLYANGTSVSDS 204
           LYI    +G  +FAP       R + V++  F++ L+  GT+ SDS
Sbjct: 100 LYILGIAFGPMIFAPFSEVNG-RKIGVLVPFFLSILFTIGTASSDS 144


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 334  HLMXALRLLSWSS*EYWFDFFXRSLXVCGQPR 239
            HL        WS  ++W +FF  +  +C  PR
Sbjct: 1770 HLCLTASSTEWSLIKHWCNFFTETGPLCDFPR 1801


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 316 RLLSWSS*EYWFDFFXRSLXVCGQPRMTVXKDAVXRVW 203
           R++ W   ++    +   +   G+   T  KDA+ RVW
Sbjct: 176 RIMQWEPSQFKESVWASEISKSGKYLATAGKDAIIRVW 213


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 19/97 (19%), Positives = 35/97 (36%)
 Frame = +1

Query: 163 VASLYANGTSVSDSKLXRPHLXQQSSSVDRIRTMTXEKSQTSILTRTKTGDEVXSSNVRK 342
           + S   + ++ S+S     +    +S+     +M  + S  S +  +  G    ++N   
Sbjct: 509 IGSFMGSSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNN 568

Query: 343 XTSAXENNKNXTGMEVTGLSQXSGMQGLPRISSGSAS 453
             S   NN N            S +QGL      S+S
Sbjct: 569 SNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSS 605


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 208  VWSRRLRFRWHIXTPRKDTE*LERFSSFVR 119
            VW R LR R  + +PR + E   +F++  R
Sbjct: 1485 VWQRMLRIRSLVISPRDNMEMWIKFANLCR 1514


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 331 LMXALRLLSWSS*EYWFDFF 272
           ++ A+ +LSW + + WF FF
Sbjct: 207 ILLAVSILSWIASKLWFRFF 226


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 75  FINLLGLRCVRAEPXRTKDENRSSYSVSFRGVXICQRNLSLRLQTRKTA 221
           F NLLG     A   RT   ++ S +   R + +C   L L L  +  A
Sbjct: 191 FTNLLGWNSESASVKRTTSFSKKSSANMIRHLTVCNDFLQLGLNPKLQA 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.127    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,477
Number of Sequences: 5004
Number of extensions: 23788
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)