Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0497
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_52763| Best HMM Match : DUF1498 (HMM E-Value=1.9)                   28   4.2  
SB_55855| Best HMM Match : Y_phosphatase (HMM E-Value=0.067)           27   7.3  
SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)             27   9.6  
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                27   9.6  
SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_14152| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 76  SSTYWGYGVFAPNPXAQKMRTVQVIL--CLFVASLYANGTSV 195
           S T  G+G  +PN  A+K  +V V+L   LF A+++ N T++
Sbjct: 312 SLTTVGFGNVSPNTNAEKAFSVCVMLVGALFYAAIFGNMTAI 353


>SB_52763| Best HMM Match : DUF1498 (HMM E-Value=1.9)
          Length = 355

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
 Frame = +2

Query: 182 TEPQSPTPNSXDRIFXNSHP-RLTAYXQ*PXKKVKPVFSRGPRQETKCXHQMC 337
           T PQ P P S  R+   SH   +  Y   P   V  V   G RQ  K     C
Sbjct: 28  TSPQQPLPTSVVRVVKGSHVFHVPTYTAEPEMSVYDVGVDGGRQAEKQKSNCC 80


>SB_55855| Best HMM Match : Y_phosphatase (HMM E-Value=0.067)
          Length = 319

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 304 KTGDEVXSSNVRKXTSAXENNKNXTGMEVTGLSQXSGMQGLPRISS 441
           +TG+E    + R  T + ENN    G  +TG++  +G  G  R SS
Sbjct: 127 RTGNEYGQIH-RSGTGSSENNYEPIGAGLTGVAVAAGSPGSRRGSS 171


>SB_48433| Best HMM Match : Ion_trans (HMM E-Value=6.1e-26)
          Length = 1344

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 76  SSTYWGYGVFAPNPXAQKMRTVQVIL--CLFVASLYANGTSV 195
           S T  G+G  +PN  A+K+ ++ V+L   LF A+++ N  ++
Sbjct: 630 SLTSVGFGNVSPNTNAEKIFSICVMLIGSLFYAAIFGNVAAI 671


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +1

Query: 100 VFAPNPXAQKMRTVQVILCLFVASLYANGTSVSDSKLXRPHLXQQSSSVDRIRTMTXEKS 279
           +F P     +   V+  L   + S+++NGT +++     P    Q++ V+++R  T   +
Sbjct: 174 LFGPPGCEYETEDVKDELAAVLISVHSNGTHITNQ---TPSTPNQTAKVEKVRRPTVSSA 230

Query: 280 QTS 288
            TS
Sbjct: 231 GTS 233


>SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 138 RSSYSVSFRGVXICQRNLS-LRLQTRKTASLXTV 236
           RS+Y+ + R V +CQ  +S +RLQ    AS+  +
Sbjct: 82  RSNYNAAVRSVNLCQEYMSGMRLQQVHCASIPRI 115


>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 91  GYGVFAPNPXAQKMRTVQVIL--CLFVASLYANGTSV 195
           G+G  +PN  A+K+ ++ V++   L  AS++ N T++
Sbjct: 338 GFGNVSPNTNAEKVFSILVMIVGALMYASIFGNMTAI 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.127    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,771,067
Number of Sequences: 59808
Number of extensions: 197106
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)