Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0497
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.095
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.1 bits (57), Expect = 0.095
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 98   VCSRRTRTHKR*EPFKLFCVFSWRXYMPTEPQSP 199
            VCS   R     EP  +F   +   YMP+EP++P
Sbjct: 934  VCSNYLREISDGEPLYVFVRSAPNFYMPSEPKAP 967


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 436  ISLAALASQKXEIGRXPPCQXHS 368
            +  AAL SQ  ++   PP   HS
Sbjct: 1118 VRCAALTSQSLQVSWQPPPNTHS 1140


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 436  ISLAALASQKXEIGRXPPCQXHS 368
            +  AAL SQ  ++   PP   HS
Sbjct: 1114 VRCAALTSQSLQVSWQPPPNTHS 1136


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 DSKLXRPHLXQQSSSVDRIRTMTXEKS 279
           DSKL +  +   +S+ DRIR +T  K+
Sbjct: 541 DSKLCQQCVGNLASNNDRIRQVTKCKA 567


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 DSKLXRPHLXQQSSSVDRIRTMTXEKS 279
           DSKL +  +   +S+ DRIR +T  K+
Sbjct: 541 DSKLCQQCVGNLASNNDRIRQVTKCKA 567


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 DSKLXRPHLXQQSSSVDRIRTMTXEKS 279
           DSKL +  +   +S+ DRIR +T  K+
Sbjct: 541 DSKLCQQCVGNLASNNDRIRQVTKCKA 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.127    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,432
Number of Sequences: 438
Number of extensions: 1750
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)