Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0497
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01400.1 68414.m00055 hypothetical protein                          28   3.4  
At5g52230.1 68418.m06483 expressed protein                             27   7.8  
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t...    27   7.8  

>At1g01400.1 68414.m00055 hypothetical protein
          Length = 204

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +2

Query: 122 HKR*EPFKLFC---VFSWRXYMPTEPQSPTPNSXDRIFXNSHPRLTAY 256
           HKR   F   C   VF W  Y P EP  P+ +    +  NSH    AY
Sbjct: 117 HKRLPVFDEVCSGAVFPW--YGPQEPDLPSSSGIGTMSANSHDDRRAY 162


>At5g52230.1 68418.m06483 expressed protein 
          Length = 746

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 271 EKSQTSILTRTKTGDEVXSSNVRKXTSAXENNKN 372
           ++S   +L + KT D+V  S  R  +S+ E++KN
Sbjct: 118 KRSADDVLEKEKTIDDVRRSKRRNLSSSDEHSKN 151


>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 364

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 208 VWSRRLRFRWHIXTPRKDTE*LERFSSFVRXGSARTHRNPSKLMKYKV 65
           VW    R+R H    R   E ++RF+ F R      HR   K   YK+
Sbjct: 34  VWKLYERWRGHHSVSRASHEAIKRFNVF-RHNVLHVHRTNKKNKPYKL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.127    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,956,322
Number of Sequences: 28952
Number of extensions: 127935
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)