Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0494
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    34   0.022
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   3.4  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   7.9  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.9  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   7.9  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
 Frame = +1

Query: 238  NPEQEFDDIKHTTLSER-GALR-EAARCLKCADAPCQK--SCPTQIDVKXFITSIANXNY 405
            NP +  +D K  ++  R   LR + ARC+ C    CQ    CP    +  +   +    +
Sbjct: 1629 NPLKRTNDWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQW 1688

Query: 406  YGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNLHALKKXLSI 531
              A   +L  N      G VCP    C G C L  ++  + I
Sbjct: 1689 KEALTQLLLTNNFPEFTGRVCPAP--CEGACTLGIIESPVGI 1728


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 86  ELLSKELPDIE-NLLKLNPTVKPYTNLVPSAQTKKIKQHW 202
           ELL   LP I+ NL ++    K Y N VP+++    K H+
Sbjct: 28  ELLEPCLPFIQFNLGEIEQRAKHYLNTVPTSKDGNTKAHY 67


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 134 NPTVKPYTNLVPSAQTKKIKQHWKRNADRKCTTCPTLNKNSTISNTRR 277
           N  V P +N++ S  T   + H  +  DR+C+T   L +   +  TRR
Sbjct: 17  NDLVHPLSNILGSLVTYDSRLHLPQPKDRQCSTLVPLYRR-LLKATRR 63


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 146 KPYTNLVPSAQTKKIKQHWKRNADRKCTTCPTLNKNSTISNTRRCQNVELYGR 304
           +P   L  +  T  +   +++++  K  TC TLN   +  +TR   N+  +G+
Sbjct: 14  EPSNVLCHNLHTGTLVSTFRQSSPAKNATCTTLNHLLSAQHTRPQLNIHNFGK 66


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -3

Query: 128  SGDSRCRAALYLVVRH---DVGDGFKKVSFV 45
            SGD  CRA L L V H    VG G  + + +
Sbjct: 908  SGDPNCRAVLILAVGHILKKVGSGVPQTTLI 938


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1   HGKSILIHEDILLVITKLTFLNPSPTSWRTTK*RAARHRES-PEVKSYSEAL 153
           +G  I + +  L ++  +TF++PS +S    K +  R+ E   ++K  SE L
Sbjct: 318 NGSKIRVQQLSLSLVEYITFIHPSSSSPIVRKKKVLRYEEDLDDMKLTSEGL 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,254
Number of Sequences: 5004
Number of extensions: 56792
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)