Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0494
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0669 - 5767689-5767791,5768512-5768630,5769084-5769271,576...    31   1.1  
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490...    29   2.6  
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    29   4.6  
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779...    29   4.6  
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747...    28   8.1  
05_03_0175 + 9222749-9222819,9223045-9223116,9223426-9223497,922...    28   8.1  

>08_01_0669 -
           5767689-5767791,5768512-5768630,5769084-5769271,
           5769624-5769718,5769936-5770093
          Length = 220

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 345 VVSHADRCQXLHH*HRQXELLWSXEGHFIRQ---SPRFDLR 458
           VVS  +RC  LH  H Q   +WS   HF+     SP F L+
Sbjct: 76  VVSTGERCSDLHF-HPQQRFIWSDSIHFVVNWLVSPSFTLQ 115


>01_06_1238 +
           35646647-35646932,35647333-35647950,35648732-35649032,
           35649137-35649416,35649715-35649822,35650088-35650366,
           35650805-35650963
          Length = 676

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 671 DTGQXLRRSKRFYGPXPFGSRFRIGV*SXGDAHLHEYVNSE 549
           D G+     K   G      R  +GV S GD H HE+V ++
Sbjct: 151 DNGEDKEEDKFVLGVHDGSGRIEMGVLSAGDDHRHEHVGND 191


>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 222 FLSAFLFQCCLIFLVW 175
           F+ AF F CC++FL++
Sbjct: 437 FIKAFFFYCCIVFLIY 452


>02_05_0444 - 29073740-29073844,29074417-29074725,29077910-29077981,
            29078541-29078633,29078825-29078982,29079247-29079415,
            29080204-29081241,29081632-29081759,29081926-29081985,
            29082033-29083077
          Length = 1058

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 447  FDLRHGLPHQRFMRRGMQPSRTEEGAI---NIGGLQ 545
            F  R   PH R +RR  +PS +   A+   ++GGLQ
Sbjct: 969  FRRRRSAPHWRAIRRSQRPSSSSAAAVPPSSVGGLQ 1004


>11_04_0426 -
           17573681-17574010,17574163-17574282,17574382-17574754,
           17575051-17575087,17575821-17575872
          Length = 303

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 259 RRILVQGWTCSTFSISI 209
           RRI+V GW C  FS+S+
Sbjct: 130 RRIVVLGWVCVGFSVSV 146


>05_03_0175 +
           9222749-9222819,9223045-9223116,9223426-9223497,
           9223609-9223680,9223765-9223836,9224408-9224482,
           9224587-9224658,9224912-9224977,9225051-9225095,
           9225220-9225724,9225807-9226005,9226080-9226238,
           9226316-9226434,9226556-9226766,9226905-9227136,
           9227219-9227369,9227458-9227781
          Length = 838

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +2

Query: 89  LLSKELPDIENLLKLNPTVKPYTNLVPS--AQTKKIKQHWKRNADRKCTTCPTLNKNSTI 262
           LL KEL ++ NLL L  ++  +T  +P       K++Q +  ++       PT +K   +
Sbjct: 34  LLPKELGNLTNLLSLGISLDNFTGELPEELGNLTKLQQLYIDSSGFSGPFPPTFSKLKNL 93

Query: 263 SNTRRCQNVELYGRRHD 313
            NT R  + E  G+  D
Sbjct: 94  -NTLRASDNEFTGKIPD 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,418,047
Number of Sequences: 37544
Number of extensions: 407869
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)