Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0494
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)          172   2e-43
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score =  172 bits (419), Expect = 2e-43
 Identities = 74/88 (84%), Positives = 81/88 (92%)
 Frame = +1

Query: 247 QEFDDIKHTTLSERGALREAARCLKCADAPCQKSCPTQIDVKXFITSIANXNYYGAAKAI 426
           + FDDIKHTTLSERGAL+EA RCLKC DAPCQKSCPTQ+D+K FI+ IAN N+YGAAKAI
Sbjct: 45  KNFDDIKHTTLSERGALKEAGRCLKCVDAPCQKSCPTQLDIKYFISCIANKNFYGAAKAI 104

Query: 427 LSDNPLGLTCGMVCPTSDLCVGGCNLHA 510
            SDNPLGLTCGMVCPTSDLCVGGCNL+A
Sbjct: 105 FSDNPLGLTCGMVCPTSDLCVGGCNLYA 132



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +2

Query: 119 NLLKLNPTVKPYTNLVPSAQTKKIKQHWKRNADRKCTTC 235
           NLL LNP++    N+VP+A TKK K+HWKRNAD+ C +C
Sbjct: 1   NLLSLNPSIPKKANIVPTAVTKKNKKHWKRNADKSCGSC 39



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +3

Query: 510 TEEGAINIGGLQHFAVDIFMKMGIPXTLDPNTKPATKRXGTIKS 641
           +EEG INIGGLQ FA +IF  M +P   DP+  P  +   + KS
Sbjct: 133 SEEGPINIGGLQQFATEIFKNMKLPQIRDPDLTPVDQLPESYKS 176


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 403  YYGAAKAILSDNPLGLTCGMVCPTSDLC 486
            YY + +AIL  NP G   G VCP    C
Sbjct: 1569 YYCSGRAILK-NPTGEAYGNVCPAGHYC 1595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,664,855
Number of Sequences: 59808
Number of extensions: 450163
Number of successful extensions: 1082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)