Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0494
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 171 5e-43
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 36 0.036
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 29 4.2
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 5.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 5.5
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
protein C25F6.3 protein.
Length = 1059
Score = 171 bits (415), Expect = 5e-43
Identities = 75/92 (81%), Positives = 82/92 (89%)
Frame = +1
Query: 235 SNPEQEFDDIKHTTLSERGALREAARCLKCADAPCQKSCPTQIDVKXFITSIANXNYYGA 414
S + +F DIKHTTLSERGAL+EA RCLKCADAPCQKSCPTQ+DVK FITSI+N NYYGA
Sbjct: 68 SKLKNDFRDIKHTTLSERGALKEAMRCLKCADAPCQKSCPTQLDVKSFITSISNKNYYGA 127
Query: 415 AKAILSDNPLGLTCGMVCPTSDLCVGGCNLHA 510
A+ ILSDNPLGLTCGM+CPTSDLCVG CNL A
Sbjct: 128 ARQILSDNPLGLTCGMICPTSDLCVGSCNLQA 159
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +2
Query: 89 LLSKELPDIENLLKLNPTVKPYTNLVPSAQTKKIKQHWKRNADRKC-TTC 235
LLSK+ PDIE+LL LNP V+ N VPSA TKK K +WKRN ++ C +TC
Sbjct: 16 LLSKDSPDIESLLILNPKVQDKANAVPSAVTKKNKHNWKRNEEKGCGSTC 65
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 510 TEEGAINIGGLQHFAVDIFMKMGI 581
+EEGAINIGGLQ +A D+F +M +
Sbjct: 160 SEEGAINIGGLQQYACDVFKQMNV 183
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 35.5 bits (78), Expect = 0.036
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Frame = +1
Query: 220 KMYYMSNPEQEFDDIKHTTLSE--RGALRE-AARCLKCADAPCQ--KSCPTQIDVKXFIT 384
KMY +P++ +D E R +RE AARC+ C CQ CP + +
Sbjct: 1715 KMY--RDPKERLNDWDEVYDFEAVRSNIREQAARCMDCGVPFCQGHSGCPLGNIIPKWND 1772
Query: 385 SIANXNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNL 504
+ N+ A + +L N G VCP C G C L
Sbjct: 1773 FVFKKNWRQALEQLLQTNNFPEFTGRVCPAP--CEGACTL 1810
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
W07E11.1 protein.
Length = 2207
Score = 35.5 bits (78), Expect = 0.036
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Frame = +1
Query: 220 KMYYMSNPEQEFDDIKHTTLSE--RGALRE-AARCLKCADAPCQ--KSCPTQIDVKXFIT 384
KMY +P++ +D E R +RE AARC+ C CQ CP + +
Sbjct: 1715 KMY--RDPKERLNDWDEVYDFEAVRSNIREQAARCMDCGVPFCQGHSGCPLGNIIPKWND 1772
Query: 385 SIANXNYYGAAKAILSDNPLGLTCGMVCPTSDLCVGGCNL 504
+ N+ A + +L N G VCP C G C L
Sbjct: 1773 FVFKKNWRQALEQLLQTNNFPEFTGRVCPAP--CEGACTL 1810
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +2
Query: 95 SKELPDIENLLKLNPTVKP----YTNLVPSAQTKKIKQHWKRNADRK---CTTCPTLNKN 253
+K+LPD +NLL++ TVKP + V A T+ I + R R + PT
Sbjct: 394 AKDLPDTKNLLEVVKTVKPGALIGASTVAGAFTEDIIKEMARLNPRPIIFALSNPTSKAE 453
Query: 254 STISNTRRCQN 286
T RC N
Sbjct: 454 CTAETAYRCTN 464
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 188 IKQHWKRNADRKCTTCPTLNKNSTISNTR 274
+KQ WKRN D TC + N+ S R
Sbjct: 1054 VKQEWKRNMDVSFKTCVSDGANTECSTCR 1082
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 188 IKQHWKRNADRKCTTCPTLNKNSTISNTR 274
+KQ WKRN D TC + N+ S R
Sbjct: 1054 VKQEWKRNMDVSFKTCVSDGANTECSTCR 1082
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 188 IKQHWKRNADRKCTTCPTLNKNSTISNTR 274
+KQ WKRN D TC + N+ S R
Sbjct: 1054 VKQEWKRNMDVSFKTCVSDGANTECSTCR 1082
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 161 LVPSAQTKKIKQHWKRNADRK--CTTCPTLNKNSTISNTRRCQNVELYGRRH 310
L PS++ + ++ K A+RK C TC K S T C+ + ++ RH
Sbjct: 253 LAPSSEEELLENLKKFEAERKTKCNTC--FKKLSAAQQTMHCKCLRIFCDRH 302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,045
Number of Sequences: 27780
Number of extensions: 335517
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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