Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0494
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +2

Query: 179 TKKIKQHWKRNADRKCTTCPTLNKNSTISNTRRCQNVELYGRR 307
           +K++K H + +   K  TC    K+   ++  +   V  YG +
Sbjct: 216 SKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEK 258


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 510 TEEGAINIGGLQHFAVDIFMKMGI 581
           TEE A+N+     FA  + +  GI
Sbjct: 603 TEEDALNLSSAVWFAWGVLLNSGI 626


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 SDNPLGLTCGMVCPTSDLCVGGCNL 504
           S NP+ +    + P +DL V  CN+
Sbjct: 514 SKNPVTVNLTKLHPPADLVVYACNV 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,787
Number of Sequences: 438
Number of extensions: 4035
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)