Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0494
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    28   5.1  
At2g22890.1 68415.m02717 expressed protein  ; expression support...    28   6.8  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    27   8.9  

>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 83  GELLSKELPDIENLLKLNPTVKPYTNLVPS 172
           G   + E+P IEN+LK    VK Y+ +VPS
Sbjct: 25  GICCTSEVPIIENILKSLDGVKEYSVIVPS 54


>At2g22890.1 68415.m02717 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 234 HVVH-FLSAFLFQC--CLIFLVWADGTK 160
           HVVH F+S F F    C +F  WA GTK
Sbjct: 177 HVVHGFVSMFAFCVLFCQLFHAWAHGTK 204


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 511 VREGCIPRRINRWWGRPCRKSNRGD 437
           + +G +PRR + WW R    S R D
Sbjct: 70  LEKGLLPRRYHSWWSRSGIYSGRAD 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,994
Number of Sequences: 28952
Number of extensions: 313154
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)