Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0493
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   126   2e-30
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    33   0.029
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.1  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   1.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   1.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   4.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.9  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   7.8  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  126 bits (304), Expect = 2e-30
 Identities = 61/112 (54%), Positives = 79/112 (70%)
 Frame = +3

Query: 231 GKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 410
           GK     +A++  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP A
Sbjct: 54  GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113

Query: 411 IAPLSVVIPAHNTGLGPEKTSFXQALSIPTKILKGTIEIIXGVHILKPGDKV 566
           IAPL V +PA NTG+ P KTSF QAL IPTKI +GTIEI   VH++    KV
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKV 165



 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +1

Query: 94  KSNYFVKIIQLLDEYPKCFIVGADNVGXQQIXQIXISLRGSSIVLMGKNTMMRK 255
           K+ YF K+  L ++Y   F+V  DNV  QQ+  +   LRG++ ++MGKNTM+R+
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRR 61


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 261 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 437
           ++H +N   L KLL    G VG +FT     EV     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 438 A 440
           A
Sbjct: 139 A 139


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 544 MCTPLMISIVPFKILVGIERAXKKEVFSGPRPVLXAGMTTDNGAMAP 404
           +  P +IS  P K L+GI  A   E  S  R  +    T+    +AP
Sbjct: 284 LINPEIISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 463 SGPRPVLXAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 293
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 292 SRAGL 278
           S   L
Sbjct: 195 SEEEL 199


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 367 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 269
           L +T  +S    + PTLP +   + S +G+LSR
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 238 NTMMRKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLP 417
           N+    PS + W T+  SR     SR   +S SP+  S +        + K  L L+ + 
Sbjct: 181 NSWWEDPSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMM 239

Query: 418 HCQSSF 435
             +S++
Sbjct: 240 ETESTY 245


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +1

Query: 259 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 438
           S T  T+   +   C TS + L + +P  ++  + TNC  T + +     P+     +  
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576

Query: 439 XTTPAS 456
            +TP +
Sbjct: 577 SSTPVT 582


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 198 TDLXYLLXSHVIGTHDETFWVLVQELDD 115
           +D  Y + + +I  H+  +W  +  LDD
Sbjct: 359 SDFEYAIMNEIISNHEPVYWSDIAGLDD 386


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 376 SNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMACASLCFFP 230
           SNS+   S+ S  +  +P   + C  +F+    LS  ++ AC + C  P
Sbjct: 656 SNSIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFACENCCNQP 704


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 192 LXYLLXSHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 79
           L + L  +V G HD +FW L ++L    D  +++  P S V
Sbjct: 200 LIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 448 VLXAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 314
           V  +G    + +MAP R+G+W   +N  S +  R+  +  K  +P
Sbjct: 226 VFSSGNHAYHASMAPKRSGSWR-HTNFHSTSHPRAASIGNKSGIP 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,738
Number of Sequences: 5004
Number of extensions: 47487
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)