Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0493
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        155   2e-38
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.88 
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   4.7  
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               28   6.2  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)                   27   8.2  
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      27   8.2  
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)                 27   8.2  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  155 bits (377), Expect = 2e-38
 Identities = 72/112 (64%), Positives = 89/112 (79%)
 Frame = +3

Query: 231 GKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 410
           GK     +AI+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G 
Sbjct: 38  GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97

Query: 411 IAPLSVVIPAHNTGLGPEKTSFXQALSIPTKILKGTIEIIXGVHILKPGDKV 566
           IAP+ V +PA NTGLGPEKTSF QAL+IPTKI +GTIEII  VH++K  +K+
Sbjct: 98  IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKL 149



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/45 (66%), Positives = 34/45 (75%)
 Frame = +1

Query: 121 QLLDEYPKCFIVGADNVGXQQIXQIXISLRGSSIVLMGKNTMMRK 255
           Q LDEYPK F+VG DNVG +Q+  I  SLRG   VLMGKNTM+RK
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRK 45


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 208 RGSSIVLMGKNTMMRKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSL 354
           RGS   ++G   M  KP +TT TT +P+      +RATL   + AE ++
Sbjct: 252 RGSVTSIVGVIDMKFKPYRTTLTTGKPNPVALGNARATLYCSATAEPAV 300


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 213 LQYRAHGKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 386
           ++ R+HG +      +    +N   LEK+L       G + T    VE  +K +E K+
Sbjct: 25  MELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCIEEKI 82


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 379 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 269
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 258 IKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 350
           +K HLDN P L K LP + G +  + + GDL
Sbjct: 176 LKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 277 TIQPSRNCCHTSRATL-ASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPXTTPA 453
           +I+P+R C HTS   L A       S+R    C  T SK+    V      SS   + PA
Sbjct: 151 SIRPARYCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVTSSKVLSRPA 210



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 277 TIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCWRTKSKLQLVLVPL 414
           +I+P+R C HTS   L++       S+R    C  T SK+    V L
Sbjct: 71  SIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKVLSTYVQL 117


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 375  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFXQALSIPTKILKGTIEIIXGVHIL 548
            E ++ +PA     +P S+        TGL P   S  Q LS+ T ++  ++     +   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 549  KPGDK 563
             PG K
Sbjct: 2129 TPGKK 2133


>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
          Length = 382

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = -2

Query: 463 SGPRPVLXAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRA 284
           S  R +     TT +G      +G  +   ++L+ +S  +   +T+P  P    +S SRA
Sbjct: 133 SNSRSISKGYNTTTSGLTTSRLSGRRSQSFSNLNLSSVSNSHTSTRPYRPEDYADSTSRA 192

Query: 283 -GLLSRWSLMACASLCFFP*ARYWSHVAR-YXSAXSVXFPRYR 161
            GL SR   +          + Y S + R Y S     F RYR
Sbjct: 193 TGLKSRTKTIESLPRASEHSSFYMSTIRRDYKSPPHDSFSRYR 235


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 308 VWQQFLEGWIVVQVVFDGLRIIVFFPMSTILEPR 207
           +W + LE W V++ + + + +  +   S IL+P+
Sbjct: 615 LWDEELEAWDVLEKIDEDMDVFYYVTRSMILQPK 648


>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
          Length = 342

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 265 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 369
           TTWT ++ S       R  LA CS   TS R+ TN
Sbjct: 67  TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,633,120
Number of Sequences: 59808
Number of extensions: 403378
Number of successful extensions: 994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)