Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0493
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.23 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   3.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 311 DVWQQFLEGWIVVQVVFDGLRIIVFFPMST 222
           D++ Q  E W  V +V D L++ +FF ++T
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQLYIFFLVTT 491


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 340 RVNTKPTLPLMCGNSFSRAGLL 275
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 238 NTMMRKPSKTTWTTIQPSRNCCHT 309
           NT+ R PSK + T++  S    H+
Sbjct: 356 NTLERTPSKCSQTSVHYSNGQTHS 379


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 91  WKSNYFVKIIQLLDEYP 141
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 402 DELELGLCSPTVCHGPQR 349
           D +E G+  PT C G  +
Sbjct: 361 DAVEYGIIGPTTCMGDHK 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,915
Number of Sequences: 438
Number of extensions: 3459
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)