Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0493
(569 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 117 5e-27
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 117 5e-27
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 116 1e-26
At3g50610.1 68416.m05534 hypothetical protein 31 0.54
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 31 0.72
At1g58220.1 68414.m06612 myb family transcription factor contain... 30 1.2
At1g05960.1 68414.m00625 expressed protein similar to hypothetic... 30 1.2
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 5.0
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 27 6.7
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge... 27 8.8
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 27 8.8
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 117 bits (282), Expect = 5e-27
Identities = 58/114 (50%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Frame = +3
Query: 231 GKKHNDAQAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 404
GK ++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 405 GAIAPLSVVIPAHNTGLGPEKTSFXQALSIPTKILKGTIEIIXGVHILKPGDKV 566
G +AP+ VV+ NTGL P +TSF Q L+IPTKI KGT+EII V ++K GDKV
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKV 169
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/63 (50%), Positives = 41/63 (65%)
Frame = +1
Query: 67 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXQQIXQIXISLRGSSIVLMGKNTM 246
M + KA K Y K+ QL+DEY + +V ADNVG Q+ I LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 247 MRK 255
M++
Sbjct: 61 MKR 63
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 117 bits (282), Expect = 5e-27
Identities = 58/114 (50%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Frame = +3
Query: 231 GKKHNDAQAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 404
GK ++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 405 GAIAPLSVVIPAHNTGLGPEKTSFXQALSIPTKILKGTIEIIXGVHILKPGDKV 566
G +AP+ VV+ NTGL P +TSF Q L+IPTKI KGT+EII V ++K GDKV
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKV 169
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/63 (50%), Positives = 41/63 (65%)
Frame = +1
Query: 67 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXQQIXQIXISLRGSSIVLMGKNTM 246
M + KA K Y K+ QL+DEY + +V ADNVG Q+ I LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 247 MRK 255
M++
Sbjct: 61 MKR 63
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 116 bits (279), Expect = 1e-26
Identities = 58/114 (50%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Frame = +3
Query: 231 GKKHNDAQAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 404
GK ++++ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 405 GAIAPLSVVIPAHNTGLGPEKTSFXQALSIPTKILKGTIEIIXGVHILKPGDKV 566
G +AP+ VV+ NTGL P +TSF Q L+IPTKI KGT+EII V ++K GDKV
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKV 170
Score = 62.9 bits (146), Expect = 1e-10
Identities = 31/58 (53%), Positives = 39/58 (67%)
Frame = +1
Query: 82 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGXQQIXQIXISLRGSSIVLMGKNTMMRK 255
KA K Y K+ QLL+EY + +V ADNVG Q+ I LRG S+VLMGKNTMM++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKR 64
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.1 bits (67), Expect = 0.54
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 222 RAHGKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 398
+ + + H A D + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 399 RPGAIAPLSVVIPAHNTGLGPEK 467
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 30.7 bits (66), Expect = 0.72
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 192 DXYLATWLQYRAHGKKHNDAQAIKDHLDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRD 365
+ Y WL ++ ++ + + + N P ++K PHI VGF+ T+GD+ + D
Sbjct: 755 EYYRTNWLSEKSD--VYSFGVVLLEIVTNQPVIDKTRERPHINDWVGFMLTKGDIKSIVD 812
Query: 366 KLL 374
L
Sbjct: 813 PKL 815
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = -2
Query: 487 RAXKKEVFSGPRPVLXAGMTTDNGAMAPGRAGAWTLFSN--------SLSRTSTRSPRVN 332
R K++ G P+L +G T GA A G + TL +LSR +T P
Sbjct: 277 RLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQGQQQPQPQIQALSRATTSVPVAK 334
Query: 331 TKPTLPLMCGNSFSRAGLLSRWSLMACAS 245
++ + GNS SRA L+ + +A A+
Sbjct: 335 SRVPVKKTTGNSTSRADLMVTANSVAAAA 363
>At1g05960.1 68414.m00625 expressed protein similar to hypothetical
protein GB:AAF80120 GI:8810459 from [Arabidopsis
thaliana ]
Length = 982
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 283 GLLSRWSLMACASLCFF-P*ARYWSH--VARYXSAXSVXFPR 167
G++SR L AC +LCFF P R S V RY + FPR
Sbjct: 2 GVMSRRVLPACGNLCFFCPSLRARSRHPVKRYKKMLAEIFPR 43
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 427 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 314
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 286 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 390
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 192 DXYLATWLQYRAHGKKHNDAQAIKDHLDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRD 365
+ Y WL ++ ++ + + + N P ++++ PHI VG + T+GD+ + D
Sbjct: 737 EYYRTNWLTEKSD--VYSMGIVLLEIITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMD 794
Query: 366 KLLENK 383
L +
Sbjct: 795 PKLNGE 800
>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
(glycogenin)-related similar to glycogenin
glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
Oryctolagus cuniculus [GI:165513]; contains Pfam profile
PF01501: Glycosyl transferase family 8
Length = 593
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +1
Query: 100 NYFVKIIQLLDEYPKCFIVGADNVGXQQIXQIX----ISLRGSSIVLMGKNTMMRKPSKT 267
NY + L +Y K + AD + + + + +S G+ + + M+ +PS
Sbjct: 373 NYSKFRLWQLTDYDKVIFIDADIIVLRNLDLLFHFPQMSATGNDVWIYNSGIMVIEPSNC 432
Query: 268 TWTTIQPSRN 297
T+TTI R+
Sbjct: 433 TFTTIMSQRS 442
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 419 WGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 297
+G+ T + +LQ + +S+GE E +D W Q
Sbjct: 337 FGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,852,204
Number of Sequences: 28952
Number of extensions: 266081
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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