Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0492
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.20 
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.5  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   4.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.4  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   7.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.6  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 352 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 441
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 362 MKHTDLEDSVMRNLNASITQYPVDKN 439
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 511 RPVGRTVYTAAL*V-CLYDINGLLDVLVYRILSNGS 407
           R  G+ ++ +A+ +  L+D+ GL++ L+Y+    GS
Sbjct: 463 RATGKNIHESAIALFSLHDVPGLMEELIYKSRGRGS 498


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 415  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 311
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 197 QVRSDRSHHCRHYCFHCRVLGCCGAVKENHCMIITFSVFLLIIFVAELAVGIA 355
           +V+S  +   +H+C+ CR     G + + H   +    +L    + E+A G+A
Sbjct: 526 EVQSAAAQALKHFCYDCRE-QLVGHLSQLHMFYLNAKTYLAPDPLMEVAQGLA 577


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 146 PDANYQDDQSRNGKQKIEAKHEVLYTGHSTFESP 45
           P +   D  S  G+Q  + +HEV   G ++FE P
Sbjct: 431 PSSELLDSSSDKGQQVFKGQHEV--AGTNSFEDP 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,027
Number of Sequences: 5004
Number of extensions: 50102
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)