Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0492
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 82 5e-16
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 7e-14
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 2e-12
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 65 6e-11
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 57 2e-08
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 57 2e-08
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 56 3e-08
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 52 3e-07
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 48 7e-06
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2) 43 3e-04
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 38 0.010
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 34 0.12
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 33 0.28
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 33 0.28
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 32 0.49
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.49
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 29 3.5
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_23937| Best HMM Match : PAN (HMM E-Value=0.12) 28 8.0
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16) 28 8.0
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/84 (40%), Positives = 51/84 (60%)
Frame = +2
Query: 257 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDK 436
GCCGA KEN CM+I F + LLI+ E+A + GY+ ++ + ++ +I +YP K
Sbjct: 424 GCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYP--K 481
Query: 437 NVQKTIDIIQTDLQCCGINSPADW 508
N + ID +Q D +CCG P+DW
Sbjct: 482 NNKAAIDAMQMDFECCGAKGPSDW 505
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +2
Query: 254 LGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVD 433
LGCCGA KEN CM+I F FLL++ + E+ G Y +E+ + +++ +I YP
Sbjct: 70 LGCCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDILKAIENYP-G 128
Query: 434 KNVQKTIDIIQTDLQCCGINSPADW 508
KN +K+I+ +QT +CCG ++ DW
Sbjct: 129 KN-EKSINDMQTKFKCCGADNYTDW 152
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 48 ALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENF 194
AL+G + VK L+ FN +F + GLI+ VGI A Y+ N+
Sbjct: 2 ALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVNY 50
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 347 GIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW 508
G+A + ++D + L I Y + + +D +Q ++CCGI + DW
Sbjct: 209 GLAIAVLVIQVKDELENELKNQIKSYT--GSARNAVDDMQKTVKCCGITTYEDW 260
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/84 (35%), Positives = 51/84 (60%)
Frame = +2
Query: 257 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDK 436
GC GA++EN C++ FSV L IIF +LA+G+ ++ +E ++ L ++T+Y +
Sbjct: 64 GCIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTAVTKYRDNA 123
Query: 437 NVQKTIDIIQTDLQCCGINSPADW 508
++Q ID +Q + +CCG DW
Sbjct: 124 DLQNLIDGVQQEFKCCGAKGINDW 147
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY--PV 430
GCCGA+KE+ C++ TF L II E+ GY+ +E+ + +++N +I Y
Sbjct: 343 GCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLGKDMNDTIVSYGEKG 402
Query: 431 DKNVQKTIDIIQTDLQCCGINSPADW 508
+ + D IQ +CCGIN DW
Sbjct: 403 KEGITDAYDAIQKKEKCCGINGFKDW 428
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = +2
Query: 257 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDK 436
GC GA+KEN + ++ +F+ + +A G+ +++ L D R L + Y D
Sbjct: 90 GCVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKLVDPKAR-LEDGLKSYQQDS 148
Query: 437 NVQKTIDIIQTDLQCCGINSPADW 508
+ Q+ ID IQT +CCGI S DW
Sbjct: 149 SKQEFIDFIQTRFKCCGIESYKDW 172
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2
Query: 239 FHCRVLGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 418
F + GC GA++EN C++ + II + G G+ LE V L +I
Sbjct: 115 FVITIFGCIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDAIV 174
Query: 419 QY--PVDKNVQKTIDIIQTDLQCCGINSPADWPITV 520
Y P ++ ID +QT+LQCCG+ DW +
Sbjct: 175 LYRDPTKGDLHLIIDTVQTELQCCGVQGLNDWDANI 210
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 69 CVKYLMFCFNLLFAITGLIILIVGI 143
CVKY +F N++F + G +IL VGI
Sbjct: 59 CVKYSLFTINVIFWLAGAVILAVGI 83
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +2
Query: 239 FHCRVLGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 418
F +GC GA++EN ++ + + + + ++ GIA YM +D V+ L +
Sbjct: 93 FLIATVGCIGALRENTILLAIYGGAVTLCLIFLVSAGIAVYMH----QDKVVEKLKDDLK 148
Query: 419 QY--PVDKNVQKTIDIIQTDLQCCGINSPADWPITV 520
Y P +N Q ID +QT+L+CCG+NS DW +
Sbjct: 149 HYRDPDKENFQFLIDRLQTNLKCCGVNSYTDWQTNI 184
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 66 SCVKYLMFCFNLLFAITGLIILIVG 140
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 LGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVD 433
L CCGA+KE+ CM+ T+ + IF E+ + Y+ +E ++ ++ +++ +Y +
Sbjct: 75 LACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRSTMNEYHLS 134
Query: 434 KN--VQKTIDIIQTDLQCCGINSPADW 508
+ V + ID I D +CCG DW
Sbjct: 135 GHDAVTRAIDEIHRDFKCCGNAQYRDW 161
Score = 35.9 bits (79), Expect = 0.030
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 60 GMSCVKYLMFCFNLLFAITGLIILIVGI 143
G C+K+++F FNLLF + G I +G+
Sbjct: 6 GFKCIKFMVFFFNLLFLLAGCAIFAIGV 33
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = +2
Query: 239 FHCRVLGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 418
F GC GA++EN C + + + + + +A G Y + D ++ L +
Sbjct: 89 FFIGFFGCVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQK-DKVQALKERLKQDLK 147
Query: 419 QYPVDKNVQKTIDIIQTDLQCCGINSPADW 508
+Y D Q ID +QT L+CCG+ S DW
Sbjct: 148 KYLDDPLNQDLIDFMQTLLKCCGVESYKDW 177
Score = 32.7 bits (71), Expect = 0.28
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 69 CVKYLMFCFNLLFAITGLIILIVGI 143
C KY +F N++F I GL+++ VG+
Sbjct: 27 CTKYTLFFINVIFFILGLLVMTVGV 51
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +2
Query: 239 FHCRVLGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASIT 418
F +GC GA++EN ++ + + + + ++ G A Y+ D V+ L +
Sbjct: 93 FLIATVGCIGALRENTILLAIYGGAVTLCLILLVSAGTAVYIHR----DKVVAKLKDDLQ 148
Query: 419 QY--PVDKNVQKTIDIIQTDLQCCGINSPADWPITV 520
Y P +N Q ID +QT+L+CCGINS DW V
Sbjct: 149 HYRDPDKENFQFLIDRLQTNLKCCGINSYNDWQTNV 184
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 66 SCVKYLMFCFNLLFAITGLIILIVG 140
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Frame = +2
Query: 257 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM---KHTDLEDSVM--RNLNASITQ 421
GC GA KEN CM+ TF V LLI+ E+A + Y K++ DSV + + +T+
Sbjct: 73 GCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAYNYRGKNSLNSDSVKVKDEIESDLTK 132
Query: 422 Y-------PVDKNVQKTIDIIQTDLQCCGINSPADW 508
V K D +Q +CCG+N DW
Sbjct: 133 ALKGDYGSSGQDGVTKAFDALQEKQKCCGVNGYLDW 168
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 57 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEI 155
G +K L+ FN+LF I G+ ++ VG AE+
Sbjct: 7 GAGRILKILVVFFNVLFFIFGIALIAVGAWAEV 39
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 48.0 bits (109), Expect = 7e-06
Identities = 18/74 (24%), Positives = 41/74 (55%)
Frame = +2
Query: 251 VLGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPV 430
V+GC +KEN +++++ + L++IF+ E+A G+ + +++ + + + +Y
Sbjct: 75 VVGCVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYELEVGIRGKMNRYGF 134
Query: 431 DKNVQKTIDIIQTD 472
V K ID +Q +
Sbjct: 135 TDAVTKAIDDLQKE 148
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 293 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTD 472
I+ + V L ++F E+ G + + V + + Y D ++Q ID IQ++
Sbjct: 17 IVWYMVVLAVLFTLEIIAGFLSFFFVEETRSKVSSAIKLFVVHYQDDLDLQNAIDGIQSN 76
Query: 473 LQCCGINSPADW 508
L+CCG S DW
Sbjct: 77 LKCCGGYSYHDW 88
>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
Length = 108
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/79 (22%), Positives = 41/79 (51%)
Frame = +2
Query: 272 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKT 451
+K ++ + + +++I + ++ G+ + ++ SV ++ I Y + ++Q
Sbjct: 1 MKADNVFLFQYKWVIVVIVILQVLGGLLAFAFWPNVRKSVQNQISKGIVNYRDNLDLQNI 60
Query: 452 IDIIQTDLQCCGINSPADW 508
ID IQ + +CCG +S DW
Sbjct: 61 IDGIQENFKCCGSSSINDW 79
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 266 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTD--LEDSVMRNLNASITQYPVDKN 439
GA K+N+ ++ +V +IFV E+++G + + S + ++ Y
Sbjct: 82 GAFKQNNRVLTILAVLFFVIFVTEISLGANSLTLRNEGISKSSTSASGLQLLSIYGEHPG 141
Query: 440 VQKTIDIIQTDLQCCGINSPADW 508
V + ID Q CCG+ DW
Sbjct: 142 VTEMIDNTQMGSMCCGVTDYRDW 164
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 281 NHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDI 460
N ++ T V LI +A I + + S++ +L I +P + +D
Sbjct: 32 NRVLMFTGCVLALISLAGIVAAIINSKVFLIIINRSILADLKNRIKNFPGPGT--RVVDS 89
Query: 461 IQTDLQCCGINS-PADW 508
IQ LQCCG +S P DW
Sbjct: 90 IQERLQCCGADSGPNDW 106
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 320 IIFVA-ELAVGIAGYMKHTDLEDSVMRNLNAS--ITQYPVDKNVQKTIDIIQTDLQCCGI 490
+IF+ E+ V + G ++ + + +N S I Y D +++ +D IQ +L+CCG
Sbjct: 135 VIFITFEIIVMVFGIIQSSRVPTDTREIVNWSVFILNYQ-DDSIRDDLDSIQKNLKCCGF 193
Query: 491 NSPADWPI 514
DW +
Sbjct: 194 KDYNDWEL 201
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 25/83 (30%)
Frame = +2
Query: 254 LGCCGAVKENHCMIIT-------------------------FSVFLLIIFVAELAVGIAG 358
+GCCGA+KE+ C++ T F V L ++F+ EL I G
Sbjct: 91 IGCCGALKEHTCLLKTVSIKSILYGYMYAKKISLTIRIYLQFGVILGLLFLVELGTAITG 150
Query: 359 YMKHTDLEDSVMRNLNASITQYP 427
Y+ ++++ + L+ ++ YP
Sbjct: 151 YIFRSEIKTGLSDGLDTALKDYP 173
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 257 GCCGAVKENHCMIIT 301
GCCGAVKE+ CM+ T
Sbjct: 331 GCCGAVKESRCMLAT 345
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 254 LGCCGAVKENHCMIITFS 307
+GCCGAVKEN C ++ S
Sbjct: 215 VGCCGAVKENKCFLLLVS 232
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 60 GMSCVKYLMFCFNLLFAITGLI 125
GM C+KYL+F FN +F + +I
Sbjct: 76 GMQCMKYLLFAFNFVFWCSKII 97
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 254 LGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 352
LG C + N C++ T+ F+LI+ VAE+ + +
Sbjct: 35 LGVCALLYMNPCLLKTYFSFMLILVVAEVTIAV 67
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 254 LGCCGAVKENHCMIITFSVFL 316
+GCCGA+KE+ C++ T L
Sbjct: 233 IGCCGALKEHTCLLKTIKTGL 253
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 107 CHYGIDHPDSWHQG*NKLVSLHELHR*ELLQVRSDRSHH 223
C+Y + PD+W + + SL R E++ R S+H
Sbjct: 120 CYYSLQPPDNWDKKKTSIQSLCSRERKEVITSRYQTSNH 158
>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 28.7 bits (61), Expect = 4.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 257 GCCGAVKENHCMI 295
GCCGA+KE+ C++
Sbjct: 43 GCCGAIKESRCLL 55
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 157 FISALMPTIRMINPVMANRRLKQNMRYF 74
FI+ALM I +I +M + L++ M YF
Sbjct: 39 FITALMGNIILITVIMKTKSLRRTMNYF 66
>SB_44965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1114
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -3
Query: 606 WKLVEFIGAGSDDAVIDLLGGAARARYGQTVIG 508
WK V F+G SDD LL A ARY VIG
Sbjct: 162 WKTVFFLGQSSDDEKNQLLRLEA-ARYKDIVIG 193
>SB_23937| Best HMM Match : PAN (HMM E-Value=0.12)
Length = 270
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 371 TDLEDSVMRNLNASITQYPVDKNVQKTIDII--QTDLQCCG 487
T L S++R + YP+D KTID+ TDL CG
Sbjct: 211 TALMSSMVRVCFRTNKSYPMDMGASKTIDVYCQMTDLLNCG 251
>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
Length = 501
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 340 QFSHEYDQEEY*KRYYHAVVLFDSATAA---ENATMKTIMPTMMRT 212
+F E+ + K YY V FD+ + EN T+KTI+PT RT
Sbjct: 414 EFLSEWFEAVDSKGYYGLNVEFDNPVSIHPNENYTIKTIIPTCPRT 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,365
Number of Sequences: 59808
Number of extensions: 396358
Number of successful extensions: 1113
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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