Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0492
(677 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 73 3e-15
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 6.2
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 72.5 bits (170), Expect = 3e-15
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 GCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNASITQYPV 430
GCCGA++E+HCM ITF+ FLL I + ++AV + + +K+ D ++ Y +
Sbjct: 69 GCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFL 128
Query: 431 DKNVQKTIDIIQTDLQCCGINSPADW 508
+ + ID IQ +LQCCG++S +D+
Sbjct: 129 NSESKDFIDFIQKNLQCCGVHSLSDY 154
Score = 37.9 bits (84), Expect = 9e-05
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 60 GMSCVKYLMFCFNLLFAITGLIILIVGI 143
GM +KYL+F FN +FA+ GL IL +G+
Sbjct: 4 GMGMIKYLLFIFNFVFAVCGLGILTLGV 31
Score = 23.0 bits (47), Expect = 2.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 523 PIPSTCCSAQEIN 561
PIP++CC++ E N
Sbjct: 158 PIPASCCNSPENN 170
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.2
Identities = 5/11 (45%), Positives = 10/11 (90%)
Frame = +2
Query: 65 VLCKVPHVLLQ 97
+LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.8 bits (44), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 139 PTIRMINPVMANRRLKQNMRYFTQDIPPSRAH 44
PT++ PV NR+L +++ PP + H
Sbjct: 253 PTVQQHQPVTVNRQLNSDVQP-GHGSPPVKQH 283
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,257
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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