Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0492
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05300.1 68414.m00536 metal transporter, putative (ZIP5) iden...    29   2.8  
At5g53390.1 68418.m06634 expressed protein                             29   3.7  

>At1g05300.1 68414.m00536 metal transporter, putative (ZIP5)
           identical to putative metal transporter ZIP5
           [Arabidopsis thaliana] gi|17385784|gb|AAL38432; similar
           to zinc transporter protein ZIP1 [Glycine max]
           gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 230 HYCFHCRVLGCCGAVKENHCMIIT-FSVFLLIIFVAELAVGIA 355
           H CF    LG C A    +CM IT  S+F  +     +AVG+A
Sbjct: 245 HQCFEGLGLGGCIAQGNFNCMSITIMSIFFSVTTPVGIAVGMA 287


>At5g53390.1 68418.m06634 expressed protein
          Length = 486

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 304 KRYYHAVVLFDSATAAENATMKTIMPTMMRTIGANL*KFSSVKF 173
           KR+ H ++ FD     +NA   T+   ++    A L ++ S K+
Sbjct: 240 KRFVHRIISFDDVKLVKNAMKMTVNDVLLGVTQAGLSRYLSRKY 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,549
Number of Sequences: 28952
Number of extensions: 269496
Number of successful extensions: 737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)