Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0491
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...   110   2e-25
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.88 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPBC216.06c |swi1||replication fork protection complex subunit S...    27   2.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   3.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   8.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.2  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   8.2  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score =  110 bits (265), Expect = 2e-25
 Identities = 56/76 (73%), Positives = 62/76 (81%)
 Frame = +3

Query: 255 LALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAV 434
           LALG ERT+ ELIPFL E+I DEDEVL ALA+QLGNF++ VGG E+AH LL PLE LAA 
Sbjct: 40  LALGPERTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSPLENLAAT 99

Query: 435 EETVVRDKAVASLRAV 482
           EETVVRDKAV SL  V
Sbjct: 100 EETVVRDKAVDSLNKV 115



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 20/30 (66%), Positives = 28/30 (93%)
 Frame = +1

Query: 166 LYPIAVLIDELKNEDVQLRLNSIKKLSTIA 255
           LYPIAVLIDELK++++  RLN++++LSTIA
Sbjct: 10  LYPIAVLIDELKHDEITYRLNALERLSTIA 39



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +2

Query: 509 EEHFVPLVQRLAGGDWFTSRNICLWDSLVSANPRVSAVVKAELRQHFCSL 658
           E++FVPLVQRL+  +WFTSR         + +   +  VK  LRQ F  L
Sbjct: 125 EQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHL 174



 Score = 33.1 bits (72), Expect = 0.041
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 261 LGVERTKSELIPFLTETIYDED-EVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVE 437
           LG E+T   L+P   E + DE+ EV L +  +L     +VG    +  LLP + TLA  +
Sbjct: 354 LGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDK 413

Query: 438 ETVVR 452
           +  VR
Sbjct: 414 QWRVR 418


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 222  FELYKEVVDDRLALGVERTKSELIPFLTETIYDEDEVLLALAEQL 356
            F L ++VVD     GVE      + F  ET+  E++ LL++ E L
Sbjct: 2668 FRLTRDVVDGMGITGVEGVFRRCMEFTLETLRREEDSLLSVLEVL 2712


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 118 VKYVRMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIAWLWAWRGLN 282
           ++YV  + SD  TDES++P+   + +++++D +   +S   L + A     R L+
Sbjct: 53  LRYVNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQLS 106


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 299 ERDQLRFSPLHAQSQAIVDNFFIEFKR 219
           ER+  R  P+H      V +FF+EF R
Sbjct: 357 EREDPRVLPIHKMQLLYVQSFFLEFMR 383


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 402 LLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALR 512
           LLP +    A ++  VRD A+A+ +A+    +P A++
Sbjct: 96  LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVK 132


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 503 GTEEHFVPLVQRLAGGDWFTSRNICLWDSLVSANPRV 613
           G  E + P V    G DW+  R++  W   ++A PR+
Sbjct: 49  GYPEEWFPSVSATIG-DWYPERSVFQWLIALTATPRL 84


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 265 PRAKRSSTTSL*SSNEAVHPHSSAHL 188
           P+A +   T L SS+   H H+S HL
Sbjct: 104 PKANKVEVTDLPSSSSVEHLHTSKHL 129


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 231 YKEVVDDRLALGVERTKSELIPFLTETIYDEDEVL 335
           Y+E++   L   +E+ K E++PFL    Y  +EVL
Sbjct: 469 YQEILV--LKSSIEKEKVEIVPFLDIRKYSPNEVL 501


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 147 VTRCHSYVFNSL*FQFELNGH*IVTLKVEYYQ*QIFIKTNKPSSDGAKS 1
           V R  + V  SL  QF L     V      YQ  + +K+N  S DG K+
Sbjct: 358 VNRYLNIVPGSLDLQFSLTNENFVHWNSTVYQELLNLKSNNSSVDGVKT 406


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 226 SNEAVHPHSSAHL*ERQSDTMIHPSRSHSLPFLRI*LSLIS---IRTKRTLNCHTKS*VL 56
           +NE +     A +  R  + ++HPS     P LR   ++++   ++T+  +NC   S +L
Sbjct: 279 ANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALL 338

Query: 55  SI 50
           S+
Sbjct: 339 SL 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,163
Number of Sequences: 5004
Number of extensions: 50136
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)