Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0491
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370...   102   2e-22
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798     29   4.9  
05_06_0070 + 25342965-25343882,25343968-25344618                       28   6.4  

>09_02_0058 -
           3704138-3704257,3704355-3704421,3704502-3704641,
           3705332-3705424,3705927-3706109,3706491-3706595,
           3706738-3706818,3706905-3707046,3707207-3707286,
           3707456-3707568,3708051-3708297,3708659-3709051
          Length = 587

 Score =  102 bits (245), Expect = 2e-22
 Identities = 53/72 (73%), Positives = 57/72 (79%)
 Frame = +3

Query: 258 ALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVE 437
           ALG ERT+ ELIPFL+E   DEDEVLLA+AE+LG FI  VGG E AH LLPPLETL  VE
Sbjct: 39  ALGEERTRKELIPFLSENNDDEDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE 98

Query: 438 ETVVRDKAVASL 473
           ET VRDKAV SL
Sbjct: 99  ETCVRDKAVESL 110



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 28/33 (84%), Positives = 32/33 (96%)
 Frame = +1

Query: 157 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIA 255
           DE LYPIA+LIDELKNED+QLRLNSI++LSTIA
Sbjct: 5   DEPLYPIAILIDELKNEDIQLRLNSIRRLSTIA 37



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 23/60 (38%), Positives = 31/60 (51%)
 Frame = +2

Query: 518 FVPLVQRLAGGDWFTSRNICLWDSLVSANPRVSAVVKAELRQHFCSLLAKDXTLPMGAXA 697
           FVP+V+RLA G+WFT+R +        A P     +KAELR  +  L   D  +   A A
Sbjct: 126 FVPVVKRLAAGEWFTAR-VSSCGLFHIAYPSAPDQLKAELRTIYGQLCQDDMPMVRRAAA 184


>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
          Length = 273

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 712 CKAGQRXRTHRKCSVFGQKRAKMLTKFRLHYGRNAW 605
           CKA Q+ + H +  ++  +  + L  F L YG   W
Sbjct: 3   CKACQKPKVHYRKGLWSPEEDQKLRDFILRYGHGCW 38


>05_06_0070 + 25342965-25343882,25343968-25344618
          Length = 522

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 318 DEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETL---AAVEETVVRDKAVAS 470
           DED V +   EQLG    L    + A  L PP+  L    A+E+TV+    VA+
Sbjct: 353 DEDTVAVVREEQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAA 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,362
Number of Sequences: 37544
Number of extensions: 345090
Number of successful extensions: 962
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)