Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0491
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44) 48 8e-06
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17) 33 0.31
SB_13309| Best HMM Match : EGF (HMM E-Value=0) 31 1.2
SB_20025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3) 28 6.6
SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47) 28 6.6
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 28 8.7
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_29772| Best HMM Match : HEAT (HMM E-Value=1.54143e-44)
Length = 405
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 509 EEHFVPLVQRLAGGDWFTSR-NICLWDSLVSANPRVSAVVKAELRQHFCSLLAKD 670
E HFVPL++RL+ GDWFT R + C S+ PR++A +KAELR F +L D
Sbjct: 44 ENHFVPLLKRLSQGDWFTLRTSACGLFSV--CYPRINANMKAELRVQFRNLCNDD 96
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 133 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLS 246
MA+SD D+SLYPIAVLIDEL+NEDVQ + S++ +S
Sbjct: 1 MASSDG--DDSLYPIAVLIDELRNEDVQ-AVESLRLIS 35
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Frame = +3
Query: 267 VERTKSELIPFLTETIYDE-DEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEET 443
+E KSEL+P T DE D V L E ++ + L+P +++ A +
Sbjct: 107 LEFVKSELVPLFTNLSSDEQDSVRLLAVENCPQIAQVLPHEDKDSILMPTVKSAAYDKSW 166
Query: 444 VVRDKAVASLRAVAEHHSPQALRNTLCH*YSVLPEETGLLPETSACG 584
VR + + + P+ + L + VL ++ +A G
Sbjct: 167 RVRYMVADKITELQKAVGPEITKTELVPAFQVLLKDCEAEVRAAAAG 213
>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
Length = 722
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 ALGVERTKSELIPFLTETIYDED-EVLLALAEQLGNFINLVGGGEF 392
ALG E TK+ +IP L E DE+ V L+ E + N +NL+ F
Sbjct: 29 ALGTETTKTSVIPELVELTNDEETSVRLSGMETITNLLNLLDDVNF 74
>SB_13309| Best HMM Match : EGF (HMM E-Value=0)
Length = 718
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 567 LEVNQSPPARRCTNGTKCSSVPGGYGARQQHG 472
++VN+ + C NG C++ PGGY + G
Sbjct: 537 IDVNECASSNPCKNGGVCTNSPGGYSCKCASG 568
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 564 EVNQSPPARRCTNGTKCSSVPGGYGARQQHG 472
+VN+ + C NG C++ PGGY + G
Sbjct: 382 DVNECASSNPCKNGGVCTNSPGGYSCKCASG 412
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 564 EVNQSPPARRCTNGTKCSSVPGGYGARQQHG 472
+VN+ + C NG C++ PGGY + G
Sbjct: 421 DVNECASSNPCKNGGVCTNSPGGYSCKCASG 451
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 564 EVNQSPPARRCTNGTKCSSVPGGYGARQQHG 472
+VN+ + C NG C++ PGGY + G
Sbjct: 460 DVNECASSNPCKNGGVCTNSPGGYSCKCASG 490
>SB_20025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 578 LWDSLVSANPRVSAVVKAELRQHFCSLLAKDXTL-PMGAXALPGLTK 715
++DSL ANP V A H L D L +GA L G+TK
Sbjct: 2 VFDSLFGANPNSKLRVNAVQFVHHICLFGTDQVLKAIGAVILSGMTK 48
>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
Length = 1347
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 297 FLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKA 461
FL I DE+ V L E + N ++ +G HCL+P + + E ++ ++
Sbjct: 502 FLMTGISDENGVTLPAYELVTNRVSELGDNVTDHCLMPRVSQVEHAENCLMTGRS 556
>SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)
Length = 642
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 303 TETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEET 443
TET+ D + LL AE GN +L F ++ L VE T
Sbjct: 426 TETLNDTADQLLQKAEDEGNLRHLTQANSFRRTAKDKMDELVQVENT 472
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -3
Query: 669 SLARSEQKC*RSSAFTTAETRGLADTKESHR-QMFLEVNQSPPARRCTNGTKCSSVPGGY 493
S S +C +S TR TKES R + + V QS R C + ++C S
Sbjct: 113 SECESTSEC--ASTTECESTRECESTKESVRVRQSVRVRQSESTRECESTSECESTRECE 170
Query: 492 GARQQHGAR 466
AR+ R
Sbjct: 171 SARECESTR 179
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 461 CLVSDYCFFHCR*CLQWRKETVCKFSPSNQVY 366
C +++YC CR QWR + C + S Q+Y
Sbjct: 24 CNIAEYCSAQCRDDNQWRHKVDCD-NVSRQLY 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,333,865
Number of Sequences: 59808
Number of extensions: 384663
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -