Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0491
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   130   7e-31
U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,...    31   1.1  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  130 bits (315), Expect = 7e-31
 Identities = 69/110 (62%), Positives = 76/110 (69%)
 Frame = +3

Query: 255 LALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAV 434
           LALGVERT++ELI FLT+TIYDEDEVLL LAEQLGNF  LVGG +  HCLL PLE LA V
Sbjct: 42  LALGVERTRNELIQFLTDTIYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATV 101

Query: 435 EETVVRDKAVASLRAVAEHHSPQALRNTLCH*YSVLPEETGLLPETSACG 584
           EETVVRDKAV SLR +A+ HS  +L          L         TSACG
Sbjct: 102 EETVVRDKAVESLRKIADKHSSASLEEHFVPMLRRLATGDWFTSRTSACG 151



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)
 Frame = +1

Query: 133 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIA 255
           M+  +  TD++LYPIAVLIDEL+NEDV LRLNSI+KLSTIA
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIA 41


>U39997-2|AAK68388.1|  378|Caenorhabditis elegans Dehydrogenases,
           short chain protein5 protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 366 INLVGGGEFAHCLLPPLETLAAVEETVV-RDKAVASLRAVAEHHSPQALRNTLC 524
           +N +G  EF  C+LPP+E     +  V+   + V  +  +A + + +AL   LC
Sbjct: 196 VNGMGAAEFLSCVLPPMEKSGGGQIVVLSSSQGVRPIPMLAAYCATKALMTFLC 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,286
Number of Sequences: 27780
Number of extensions: 286204
Number of successful extensions: 787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)