Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0491
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.94 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.94 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 335 ENLVFIIDCLSEERDQLRFSPLHAQSQAIVDNFFIEFK 222
           EN++ I+D L +E +QL         + + D ++ E+K
Sbjct: 373 ENVLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYK 410


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 594  TKESHRQMFLEVNQSPPARRCTNGTKCSSVPG 499
            T +  R M+ E+N   P RRC    +  S  G
Sbjct: 1681 TWDPRRHMYEELNHCAPNRRCPPPPRMGSAEG 1712


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 219 SFELYKEVVDDRLALGV 269
           SF +++E   DR+ LG+
Sbjct: 265 SFWIHREATSDRVGLGI 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,100
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)