Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0491
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A...   102   2e-22
At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A...   102   3e-22
At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A...    99   1e-21
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A...    29   3.1  
At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein SP:Q9L...    28   7.1  
At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putativ...    28   7.1  
At1g27910.1 68414.m03420 U-box domain-containing protein contain...    28   7.1  
At4g34400.1 68417.m04886 transcriptional factor B3 family protei...    27   9.4  
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c...    27   9.4  
At1g77270.1 68414.m08999 expressed protein                             27   9.4  

>At3g25800.1 68416.m03211 serine/threonine protein phosphatase 2A
           (PP2A) 65 KDa regulatory subunit A identical to protein
           phosphatase 2A 65 kDa regulatory subunit (pDF1)
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score =  102 bits (245), Expect = 2e-22
 Identities = 58/109 (53%), Positives = 67/109 (61%)
 Frame = +3

Query: 258 ALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVE 437
           ALG ERT+ ELIPFL+E   D+DEVLLA+AE+LG FI  VGG E+AH LLPPLETL+ VE
Sbjct: 39  ALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVE 98

Query: 438 ETVVRDKAVASLRAVAEHHSPQALRNTLCH*YSVLPEETGLLPETSACG 584
           ET VR+KAV SL  V        L +        L          SACG
Sbjct: 99  ETCVREKAVESLCRVGSQMRESDLVDHFISLVKRLAAGEWFTARVSACG 147



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 28/33 (84%), Positives = 32/33 (96%)
 Frame = +1

Query: 157 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIA 255
           DE LYPIAVLIDELKN+D+QLRLNSI++LSTIA
Sbjct: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIA 37


>At1g25490.1 68414.m03165 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit A (RCN1) identical to
           phosphoprotein phosphatase 2A, regulatory subunit A
           GI:1262171 from [Arabidopsis thaliana]
          Length = 588

 Score =  102 bits (244), Expect = 3e-22
 Identities = 57/109 (52%), Positives = 66/109 (60%)
 Frame = +3

Query: 258 ALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVE 437
           ALG ERT+ ELIPFL+E   D+DEVLLA+AE+LG FI  VGG EFAH LLPPLE+L  VE
Sbjct: 39  ALGEERTRKELIPFLSENSDDDDEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVE 98

Query: 438 ETVVRDKAVASLRAVAEHHSPQALRNTLCH*YSVLPEETGLLPETSACG 584
           ET VR+KAV SL  +        L  +       L          SACG
Sbjct: 99  ETCVREKAVESLCKIGSQMKENDLVESFVPLVKRLAGGEWFAARVSACG 147



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 28/33 (84%), Positives = 32/33 (96%)
 Frame = +1

Query: 157 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIA 255
           DE LYPIAVLIDELKN+D+QLRLNSI++LSTIA
Sbjct: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIA 37


>At1g13320.1 68414.m01546 serine/threonine protein phosphatase 2A
           (PP2A) 65 kDa regulatory subunit, putative similar to
           protein phosphatase 2A 65 kDa regulatory subunit
           GI:683502 from [Arabidopsis thaliana]
          Length = 587

 Score =   99 bits (238), Expect = 1e-21
 Identities = 50/72 (69%), Positives = 59/72 (81%)
 Frame = +3

Query: 258 ALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVE 437
           ALG ERT+ ELIPFL+E   D+DEVLLA+AE+LG FI  VGG E+A+ LLPPLETL+ VE
Sbjct: 39  ALGEERTRKELIPFLSENNDDDDEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVE 98

Query: 438 ETVVRDKAVASL 473
           ET VR+KAV SL
Sbjct: 99  ETCVREKAVDSL 110



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +1

Query: 148 SGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIA 255
           S  DE LYPIAVLIDELKN+D+Q RLNSIK+LS IA
Sbjct: 2   SMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIA 37



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 23/62 (37%), Positives = 31/62 (50%)
 Frame = +2

Query: 512 EHFVPLVQRLAGGDWFTSRNICLWDSLVSANPRVSAVVKAELRQHFCSLLAKDXTLPMGA 691
           EHF PL +RL+ G+WFT+R +        A P    V+K ELR  +  L   D  +   A
Sbjct: 124 EHFTPLAKRLSAGEWFTAR-VSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVRRA 182

Query: 692 XA 697
            A
Sbjct: 183 AA 184


>At1g27920.1 68414.m03421 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 592

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 351 QLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLR 476
           ++GN  NLV  GE  H     ++ LAA++E + R K  A+ R
Sbjct: 377 EMGNITNLVDSGEVDH-----VDLLAAMDEKIARAKEEAASR 413


>At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein
           SP:Q9LXX5; PMID:11719511;  F22K20.16 - Arabidopsis
           thaliana, EMBL:AC002291;
          Length = 262

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 270 ERTKSELIPFLTETIYDEDEVLLALAEQLGN 362
           E+  + L PF+T   YD DE+L    E++G+
Sbjct: 174 EKVIASLGPFVTGNSYDSDELLKTSIEKIGD 204


>At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putative
           similar to Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] (EC 2.4.1.15) (Trehalose-6-phosphate
           synthase) from {Kluyveromyces lactis} SP|Q07158,
           {Saccharomyces cerevisiae} SP|Q00764; contains Pfam
           profiles PF00982: Glycosyltransferase family 20,
           PF02358: Trehalose-phosphatase
          Length = 856

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -1

Query: 383 PSNQVYEVTKLFSEC*ENLVFIIDCLSEERDQLRFSPLHAQSQAIVDNFFIEFK 222
           PSN+V  V K   E   N VFI+     E      SP      A    +FI +K
Sbjct: 607 PSNEVVSVLKALCEDPNNTVFIVSGRGRESLSNWLSPCENLGIAAEHGYFIRWK 660


>At1g27910.1 68414.m03420 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 768

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 210 CTASFELYKEVVDDRLALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLVGGGE 389
           CT S +LY  +  D + L  E+ KS L   L      ED V  ++  QL   +  +   E
Sbjct: 71  CTESSKLYLAITGDSVVLKFEKAKSSLTDSLRRV---EDIVQQSIGSQLLEILMELENTE 127

Query: 390 FA 395
           F+
Sbjct: 128 FS 129


>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 389

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 35/117 (29%), Positives = 49/117 (41%)
 Frame = -1

Query: 692 SHPSEVFXLWPEASKNADEVPPSLRPKRVG*QTLKSPTGRCFWK*TSLLRQDAVLMAQSV 513
           SH S  F + P +    D +P    PK V    L+ P G C WK  + ++ D VL +Q  
Sbjct: 22  SHFSSEFMVIPVSYY--DHIPHRF-PKTV---ILRGPGG-CSWKVATEIKDDEVLFSQGW 74

Query: 512 PQCLGAMVLGNSTERGHCLVSDYCFFHCR*CLQWRKETVCKFSPSNQVYEVTKLFSE 342
           P+     V  N+   G  L   Y   H      +R    CK     ++ EVT+L  E
Sbjct: 75  PK----FVRDNTLNDGDFLTFAYNGAHIFEVSIFRGYDACK-----EISEVTELEEE 122


>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 170

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +3

Query: 387 EFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALRNTLCH*YSVLPEETGLLP 566
           E +  ++PPL    +V+  V   KAV SL    ++   +  R T C       +  GL  
Sbjct: 69  EISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCR------KRVGLTG 122

Query: 567 ETSACGTL*C 596
               CGT+ C
Sbjct: 123 FKCRCGTMFC 132


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 551 DWFTSRNICLWDSLVSANPRVSAVVKAELRQHFCSLLAKDXTLPMGAXALP 703
           D    RN    D+L   NP+ SAV K  L +    + +   T  +G   LP
Sbjct: 68  DLCVERNASKDDALAKKNPKKSAVAKTILNKEIIEIESDTDTDEVGPRKLP 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,158
Number of Sequences: 28952
Number of extensions: 269783
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)