Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0490
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   118   5e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    68   1e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    62   4e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    60   3e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    37   0.003
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    37   0.003
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   3.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.8  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   6.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   8.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  118 bits (285), Expect = 5e-28
 Identities = 54/60 (90%), Positives = 56/60 (93%)
 Frame = +3

Query: 78  DEEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
           +EE AALV DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVG EAQSK
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61



 Score =  117 bits (282), Expect = 1e-27
 Identities = 55/69 (79%), Positives = 56/69 (81%)
 Frame = +2

Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
           GILTLKYPIEHGIV N DDMEKI HHTFYNELRVAPEE P LLT  PL PK NREKMTQI
Sbjct: 63  GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQI 122

Query: 440 MFXTFXXXA 466
           +F TF   A
Sbjct: 123 IFETFNAPA 131


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 30/50 (60%), Positives = 37/50 (74%)
 Frame = +3

Query: 105 DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQS 254
           DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG EAQ+
Sbjct: 15  DNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64



 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +2

Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNE-LRVAPEEXPVLLTXXPLXPKXNREKMTQ 436
           G+L ++ PIE GI+ N  DME+I  + + ++ L   PEE P+LLT  PL    N+EK+ +
Sbjct: 67  GLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAE 126

Query: 437 IMFXTFXXXA 466
             + T    A
Sbjct: 127 YFYETLNVPA 136


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 24/64 (37%), Positives = 43/64 (67%)
 Frame = +2

Query: 263 ILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIM 442
           +L +KYP+E+GI+ + ++M ++  +TF+ +L++ P    +LLT  P+ P  NREKM + M
Sbjct: 64  LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123

Query: 443 FXTF 454
           F  +
Sbjct: 124 FERY 127



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = +3

Query: 84  EXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGXEAQS 254
           E A +V DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VG EA++
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 27/62 (43%), Positives = 35/62 (56%)
 Frame = +2

Query: 269 TLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIMFX 448
           +L YPI HG + N D ME+    + +  LR  PE+   LLT  PL P  NRE   +IMF 
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148

Query: 449 TF 454
           +F
Sbjct: 149 SF 150



 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 96  LVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 236
           ++ DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 281 PIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIMFXTF 454
           P E  +++N D ME++  +TF  +L +   E P+ +T     P   R  MT+++F  +
Sbjct: 86  PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELY 142



 Score = 34.3 bits (75), Expect = 0.014
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 96  LVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 191
           LV DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 81  EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVG 182
           +E +A+V D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 135 NRPCTYRSHCLLPTRQXP 82
           NRP  YRSH  + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 217 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 125
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 141 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQS 254
           G+  PRA F  ++  P H G+++ M  KD   G E  S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 239 TYVRVLLSHTDHHALMAGPSDDRGEYGARSIISCETGLAHTG 114
           TY  +LL   D + +  G  +DR +  + + + C   L H+G
Sbjct: 226 TYPSLLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 PTYESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSXTNAAXSSS 77
           PT  S  P+ PT+ P     P    N     S P         PL+ TN   S+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 222 SVPYRPSRPDGGAFR 178
           SVPY PS+P+GGA++
Sbjct: 87  SVPY-PSKPNGGAYQ 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,840
Number of Sequences: 5004
Number of extensions: 36298
Number of successful extensions: 86
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)