Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0490
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 122 2e-28
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 122 2e-28
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 122 2e-28
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 121 3e-28
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 121 3e-28
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 121 4e-28
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 121 4e-28
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 120 6e-28
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 120 6e-28
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 113 6e-26
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 110 6e-25
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 108 2e-24
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 75 3e-14
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 57 1e-08
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 53 1e-07
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 53 2e-07
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 41 5e-04
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 37 0.012
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 29 2.3
At3g12650.1 68416.m01575 expressed protein 28 4.1
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 28 5.4
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 27 9.4
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 122 bits (293), Expect = 2e-28
Identities = 67/110 (60%), Positives = 74/110 (67%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHG+V+N DDMEKI HHTFYNELR+APEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXAHVRRHLSXASRCXAPVVPPVSWLDSGERWSXTAVXIXEGVS 589
MF TF A + S + + LDSG+ S T V I EG S
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGIV-LDSGDGVSHT-VPIYEGFS 172
Score = 101 bits (243), Expect = 3e-22
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVG EAQSK
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 122 bits (293), Expect = 2e-28
Identities = 67/110 (60%), Positives = 74/110 (67%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHG+V+N DDMEKI HHTFYNELR+APEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXAHVRRHLSXASRCXAPVVPPVSWLDSGERWSXTAVXIXEGVS 589
MF TF A + S + + LDSG+ S T V I EG S
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGIV-LDSGDGVSHT-VPIYEGFS 172
Score = 101 bits (243), Expect = 3e-22
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVG EAQSK
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 122 bits (293), Expect = 2e-28
Identities = 67/110 (60%), Positives = 74/110 (67%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHG+V+N DDMEKI HHTFYNELR+APEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXAHVRRHLSXASRCXAPVVPPVSWLDSGERWSXTAVXIXEGVS 589
MF TF A + S + + LDSG+ S T V I EG S
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGIV-LDSGDGVSHT-VPIYEGFS 172
Score = 101 bits (243), Expect = 3e-22
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVG EAQSK
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 121 bits (292), Expect = 3e-28
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHGIV+N DDMEKI HHTFYNELRVAPEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXA 466
MF TF A
Sbjct: 125 MFETFNVPA 133
Score = 106 bits (254), Expect = 1e-23
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
E+ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG EAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 121 bits (292), Expect = 3e-28
Identities = 57/69 (82%), Positives = 58/69 (84%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHGIV+N DDMEKI HHTFYNELRVAPEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXA 466
MF TF A
Sbjct: 125 MFETFNTPA 133
Score = 106 bits (254), Expect = 1e-23
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
E+ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG EAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 121 bits (291), Expect = 4e-28
Identities = 57/69 (82%), Positives = 57/69 (82%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHGIV N DDMEKI HHTFYNELRVAPEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXA 466
MF TF A
Sbjct: 125 MFETFNTPA 133
Score = 106 bits (254), Expect = 1e-23
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
E+ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG EAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 121 bits (291), Expect = 4e-28
Identities = 57/69 (82%), Positives = 57/69 (82%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHGIV N DDMEKI HHTFYNELRVAPEE PVLLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXA 466
MF TF A
Sbjct: 125 MFETFNTPA 133
Score = 106 bits (254), Expect = 1e-23
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
E+ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG EAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 120 bits (290), Expect = 6e-28
Identities = 56/69 (81%), Positives = 57/69 (82%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHGIV N DDMEKI HHTFYNELRVAPEE P+LLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXA 466
MF TF A
Sbjct: 125 MFETFNAPA 133
Score = 106 bits (254), Expect = 1e-23
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
E+ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG EAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 120 bits (290), Expect = 6e-28
Identities = 56/69 (81%), Positives = 57/69 (82%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTLKYPIEHGIV N DDMEKI HHTFYNELRVAPEE P+LLT PL PK NREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 440 MFXTFXXXA 466
MF TF A
Sbjct: 125 MFETFNAPA 133
Score = 106 bits (254), Expect = 1e-23
Identities = 49/59 (83%), Positives = 52/59 (88%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
E+ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVG EAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 113 bits (273), Expect = 6e-26
Identities = 50/65 (76%), Positives = 56/65 (86%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GIL+LKYPIEHG+V+N DDMEKI HHTFYNELR+ PEE P+LLT PL PK NREKMTQI
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQI 125
Query: 440 MFXTF 454
MF +F
Sbjct: 126 MFESF 130
Score = 100 bits (239), Expect = 8e-22
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQSK 257
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VG EAQ++
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQAR 64
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 110 bits (265), Expect = 6e-25
Identities = 50/65 (76%), Positives = 56/65 (86%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQI 439
GILTL YP+EHG+V+N DDMEKI +HTFY+ELRVAPEE PVLLT PL PK +REKMTQI
Sbjct: 20 GILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMTQI 79
Query: 440 MFXTF 454
MF TF
Sbjct: 80 MFETF 84
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 108 bits (260), Expect = 2e-24
Identities = 68/128 (53%), Positives = 73/128 (57%)
Frame = +2
Query: 200 RDGRYGTEGLVRRXRGTEQXGILTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXP 379
RDG E V G ILTLK P+EHGIV N DDMEKI H+TFYNELRV PEE P
Sbjct: 35 RDGLNPNESYVGE-EGHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 380 VLLTXXPLXPKXNREKMTQIMFXTFXXXAHVRRHLSXASRCXAPVVPPVSWLDSGERWSX 559
VLLT P PK NREKMTQIMF +F A S + V LD GER S
Sbjct: 94 VLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSSGRTTGVV-LDLGERVSH 152
Query: 560 TAVXIXEG 583
T V + EG
Sbjct: 153 T-VPVYEG 159
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +3
Query: 96 LVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGXEAQS 254
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG E +
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHA 51
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 75.4 bits (177), Expect = 3e-14
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +2
Query: 266 LTLKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIMF 445
L + YP+ +GIV N DDME + H FYNEL++ P + +LLT PL P NREKM + MF
Sbjct: 66 LDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMIETMF 125
Query: 446 XTF 454
+
Sbjct: 126 EKY 128
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 96 LVXDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVG 239
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVG 56
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/61 (45%), Positives = 35/61 (57%)
Frame = +2
Query: 272 LKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIMFXT 451
L YPIEHG V + D ME+ +N LR PE+ LLT PL P +RE +I+F T
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFET 145
Query: 452 F 454
F
Sbjct: 146 F 146
Score = 34.3 bits (75), Expect = 0.062
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 93 ALVXDNGSGMCKAGFAGDDAPRAVFPSIV 179
A+V DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVG 182
+E +A+V D GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 281 PIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREK 427
P + GIVT+ D ++ + H F N L + P E P+LL PL + REK
Sbjct: 88 PTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = +3
Query: 81 EEXAALVXDNGSGMCKAGFAGDDAPRAVFPSIVG 182
+E +A+V D GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +2
Query: 281 PIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIMFXTFXX 460
PI+ GIV++ D ++ I H F + L + P E P+LL PL + REK ++MF +
Sbjct: 94 PIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKV 153
Query: 461 XA 466
A
Sbjct: 154 PA 155
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 96 LVXDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 197
+V DNG+ + G+AG+ PR VF +IV RPRH+
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHK 55
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 272 LKYPIEHGIVTNXDDMEKIXHHTFYNELRVAPEEXPVLLTXXPLXPKXNREKMTQIMFXT 451
++ PI+ G + N D +I H F + L +AP +LLT PL + +++F
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120
Query: 452 F 454
F
Sbjct: 121 F 121
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 96 LVXDNGSGMCKAGFAGDDAPRAVFPSIVGRP 188
+V DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -2
Query: 217 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSXTNAAXSS 80
P P I P RGL +G T+ +SSPA+P + +P +S + S+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g12650.1 68416.m01575 expressed protein
Length = 238
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 403 EGXXSEQDGXFLGGDTQLIVEGMMXNL 323
EG E+D LG +T+ ++EGMM N+
Sbjct: 100 EGPTVERDLSALGNETRQVLEGMMKNM 126
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
gb|U06698 neuronal kinesin heavy chain from Homo sapiens
and contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 890
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 545 RRSPATIPVVRPAXYSEKH 489
RRSPATIP+ RP S H
Sbjct: 18 RRSPATIPMKRPETPSSSH 36
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 252 SVPRXLRTSPSVPYRPSRPDGGAFRRSR 169
SVPR RT+P P++ S GG+F SR
Sbjct: 677 SVPRQ-RTNPPDPFQDSWNKGGSFESSR 703
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,982
Number of Sequences: 28952
Number of extensions: 213959
Number of successful extensions: 491
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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