Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0487
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 30 2.5
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 29 3.3
03_04_0055 + 16891212-16891848,16893166-16893206 29 5.7
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 5.7
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 29 5.7
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 28 7.6
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 28 10.0
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 28 10.0
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 28 10.0
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 446 ETQ*DTDEEQRSYRAWQVDLGDFVYAGHV 532
E + D D+E SY +W VD Y HV
Sbjct: 1572 EAEIDEDQEPLSYESWDVDFATTAYRQHV 1600
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 64 VKFYXFPVKALGESQRLLLAYGGQEFE----DNRISSENWPEFKPKTPFGQMPVLEIDG 228
+K Y P+ + L G+++E D I+ PE + PFGQ+P L+ DG
Sbjct: 3 MKVYGLPMSTNVARVLVCLEEAGEQYEVVPIDFSIAEHKSPEHTSRNPFGQVPALQ-DG 60
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 217 EIDGKQYAQSTAIAGTSVASTGSP 288
EI+G++ A ST AGTS AST P
Sbjct: 113 EIEGERAAASTTGAGTSAASTTPP 136
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 145 DNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAI 255
D R ++ P F PFGQ+PVL+ + +S AI
Sbjct: 39 DLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAI 75
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 172 PEFKPKTPFGQMPVLEIDGKQYAQSTAIA 258
PE + PFG++PVLE QS AIA
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIA 72
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 160 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAIA 258
S PEF P G++PVLE +S AIA
Sbjct: 39 SNKTPEFLKMNPIGKIPVLETPDGPVFESNAIA 71
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 160 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAIAGTSVASTGSP 288
S PE+ P G++P+LE +S AIA ++S+ P
Sbjct: 600 SNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVLSSSHFP 642
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 49 PTMPNVKFYXFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEID 225
PT+ VK + ++R+L Y G + E W K T + +P+ ++D
Sbjct: 175 PTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPITDLD 233
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 49 PTMPNVKFYXFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEID 225
PT+ VK + ++R+L Y G + E W K T + +P+ ++D
Sbjct: 170 PTLEEVKKLCNTCRKFARTERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPITDLD 228
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 160 SENWPEFKPKTPFGQMPVLEIDGKQYAQSTAIA 258
S PEF P G++PVLE +S AIA
Sbjct: 63 SNKTPEFLKMNPLGKIPVLETPEGAVFESNAIA 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,253,439
Number of Sequences: 37544
Number of extensions: 344899
Number of successful extensions: 998
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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