Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0487
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 63   2e-10
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 61   9e-10
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 55   8e-08
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 48   1e-05
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   34   0.16 
SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              29   4.4  

>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 55  MPNVKFYXFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDG 228
           MP+ K Y F  +   E  RL+ A  G EFEDNR++   WP+ K +   PFGQ+P+L ID 
Sbjct: 1   MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDD 60

Query: 229 K-QYAQSTAIAGTSVASTG 282
           K + AQS AI  T +A  G
Sbjct: 61  KIKLAQSLAIM-TFIAREG 78


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +1

Query: 55  MPNVKFYXFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDG 228
           MPN K   F  +   E  RL  A GG  +ED R++ E W + K   KT  G +PVLE+DG
Sbjct: 1   MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDG 60

Query: 229 KQYAQSTAI 255
            QY +S AI
Sbjct: 61  IQYCESMAI 69


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = +1

Query: 49  PTMPNVKFYXFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TPFGQMPVLE 219
           P MP+ K + F  +   E  RL  A  G E+ED R    E W   KP+   PFGQ+P+L 
Sbjct: 21  PKMPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPPFGQVPLLV 80

Query: 220 IDGK-QYAQSTAI 255
           ID K + AQS AI
Sbjct: 81  IDDKIKLAQSMAI 93


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +1

Query: 58  PNVKFYXFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 228
           P  +   F  +A  E  R+LL      F D R++  +W   K   + PFG++P+LEI DG
Sbjct: 3   PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62

Query: 229 KQYAQSTAI 255
           ++ AQS AI
Sbjct: 63  RKLAQSHAI 71


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +1

Query: 100 ESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAIAGTSVAST 279
           E QRL+L    +E + NR ++  W E  P  P     +LEI  +Q  Q  A A     S 
Sbjct: 768 ERQRLILEQQERE-QQNRAAAAGWGEHAPVGPPPVKSLLEIQEEQARQQKAKAQNQQLSR 826

Query: 280 GSPGP 294
             P P
Sbjct: 827 SQPAP 831


>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 568

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 522 PGMYDYLKAMLQKPDLEQKYPAFRKPIEAVLAIPXV 629
           P  YDY   + +  DL +KY A R+ I   L +P +
Sbjct: 262 PTSYDYDAPLTEAGDLTEKYHAIREVIGKYLTLPDI 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,194,639
Number of Sequences: 59808
Number of extensions: 356502
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)