Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0485
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.2  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 309 DGNIVLASFELPESNIDCV 253
           DG+IV   F L E  + CV
Sbjct: 218 DGSIVFVCFSLVEDTLPCV 236


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 648 CCSPVPSQKWGTKATAA 598
           C SP PS K  T  T++
Sbjct: 47  CSSPTPSDKLNTSTTSS 63


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 587 GYNPAAVAFVPHFWDGTGEQHVG 655
           GY P   ++  HF    G  H G
Sbjct: 33  GYGPLRTSYQHHFNSPAGNAHTG 55


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 764 CNRELSMEGXFPVKL 720
           CNR+L  E  F VKL
Sbjct: 109 CNRDLGREKQFIVKL 123


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 764 CNRELSMEGXFPVKL 720
           CNR+L  E  F VKL
Sbjct: 109 CNRDLGREKQFIVKL 123


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 764 CNRELSMEGXFPVKL 720
           CNR+L  E  F VKL
Sbjct: 109 CNRDLGREKQFIVKL 123


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 764 CNRELSMEGXFPVKL 720
           CNR+L  E  F VKL
Sbjct: 109 CNRDLGREKQFIVKL 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,598
Number of Sequences: 336
Number of extensions: 4272
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)