Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0485
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 167 2e-42
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 166 3e-42
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 166 3e-42
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 2e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 4e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 6e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 35 0.015
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.020
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 33 0.034
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 33 0.034
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.034
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.24
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.24
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.32
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.56
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 28 1.7
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 27 3.0
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.9
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 3.9
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 27 3.9
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 9.1
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 25 9.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 167 bits (405), Expect = 2e-42
Identities = 87/140 (62%), Positives = 100/140 (71%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPSYIKKIGLQPSCCRFR 615
QTREHALLA+TLGVKQLIV VNKM + ++ ++IKK+G P F
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPF- 188
Query: 616 APFLGWHRGTTCWSLSTKMP 675
P G+ +G +T MP
Sbjct: 189 VPVSGF-QGDNMIEPTTNMP 207
Score = 141 bits (341), Expect = 1e-34
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = +2
Query: 44 MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HIN+V IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 224 DKLKAEREXG 253
DKLKAERE G
Sbjct: 61 DKLKAERERG 70
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 166 bits (404), Expect = 3e-42
Identities = 86/140 (61%), Positives = 100/140 (71%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPSYIKKIGLQPSCCRFR 615
QTREHALLA+TLGVKQLIV VNKM + ++ ++IKK+G P F
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPF- 188
Query: 616 APFLGWHRGTTCWSLSTKMP 675
P G+ +G +T MP
Sbjct: 189 VPVSGF-QGDNMIEPTTNMP 207
Score = 141 bits (341), Expect = 1e-34
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = +2
Query: 44 MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HIN+V IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 224 DKLKAEREXG 253
DKLKAERE G
Sbjct: 61 DKLKAERERG 70
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 166 bits (404), Expect = 3e-42
Identities = 86/140 (61%), Positives = 100/140 (71%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPSYIKKIGLQPSCCRFR 615
QTREHALLA+TLGVKQLIV VNKM + ++ ++IKK+G P F
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPF- 188
Query: 616 APFLGWHRGTTCWSLSTKMP 675
P G+ +G +T MP
Sbjct: 189 VPVSGF-QGDNMIEPTTNMP 207
Score = 141 bits (341), Expect = 1e-34
Identities = 64/70 (91%), Positives = 66/70 (94%)
Frame = +2
Query: 44 MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 223
MGKEK HIN+V IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 224 DKLKAEREXG 253
DKLKAERE G
Sbjct: 61 DKLKAERERG 70
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 97.1 bits (231), Expect = 2e-21
Identities = 46/112 (41%), Positives = 69/112 (61%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPSYIKKIGL 591
QTREHA+LA T G+ L+V +NKM P ++ S +Y + K+ +
Sbjct: 363 QTREHAVLARTQGINHLVVVINKM-------DEPSVQWSEERYKECVDKLSM 407
Score = 82.6 bits (195), Expect = 6e-17
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = +2
Query: 56 KTHINIVXIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 235
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 236 AEREXG 253
ERE G
Sbjct: 296 EEREKG 301
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.1 bits (221), Expect = 4e-20
Identities = 44/84 (52%), Positives = 55/84 (65%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NG
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHA L LG+ +++V VNK+
Sbjct: 302 QTREHAYLLRALGISEIVVSVNKL 325
Score = 72.1 bits (169), Expect = 8e-14
Identities = 31/66 (46%), Positives = 44/66 (66%)
Frame = +2
Query: 56 KTHINIVXIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 235
K +++V GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 236 AEREXG 253
ER G
Sbjct: 235 EERARG 240
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.5 bits (170), Expect = 6e-14
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 103 TISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP------- 155
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREH LLA +GVKQ++V +NK+
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKV 179
Score = 34.7 bits (76), Expect = 0.015
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 50 KEKTHINIVXIGHVDSGKSTTTGHLIYKC 136
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 298 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 477
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 478 KQLIVGVNKM 507
K +I+ NK+
Sbjct: 163 KHIIILQNKV 172
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.020
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 280 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 450
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 68 NIVXIGHVDSGKSTTTGHLIYKCGGI 145
NI H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 33.5 bits (73), Expect = 0.034
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 44 MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCG 139
MGK N+ I HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 33.5 bits (73), Expect = 0.034
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 44 MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCG 139
MGK N+ I HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 390
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.034
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 280 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 271 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
TI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 80 TINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 68 NIVXIGHVDSGKSTTTGHLIYKCG 139
N+ I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.32
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.56
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = -3
Query: 668 LVERLQHVVPRCHPRNGARKRQQLGCSPIFLMYEGYFLLDFLKSGLTVWWFSGT 507
++E QH +C ++ LGCS +FL+ +G F ++ LT+ +++GT
Sbjct: 159 ILEDQQH--NKCLVHCNQSRKDLLGCSQLFLLLKGSFTHEY----LTIDFYNGT 206
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 657 APTCCSPVPSQKWGTKATAA 598
AP C SPVPS+++ AT A
Sbjct: 551 APLCSSPVPSRRYSQYATNA 570
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 310 IDAPGHRDFIKNMITGTSQADCAVLIV 390
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 679 PRAFWLKGSNMLFPGAI 629
P + WL+G N LFPG +
Sbjct: 207 PPSIWLQGLNFLFPGRL 223
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.6 bits (56), Expect = 3.9
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -2
Query: 384 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCVPXSRSAFSLSNTQAYL 205
EH+A+ L S +L IS R N GNI L S + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 204 KDPLPI 187
K LPI
Sbjct: 62 KALLPI 67
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 259 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 345
I+I + E +++ T+ID PG DFI N
Sbjct: 73 IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 230 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 102
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -1
Query: 769 QDAIESFQWRAIFPSSFCPSFTLHLP 692
QDA++ F W + P++ P+ P
Sbjct: 167 QDALQDFNWEVLSPTAEAPAILPRFP 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,778
Number of Sequences: 5004
Number of extensions: 68589
Number of successful extensions: 209
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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