Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0485
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             114   9e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          105   4e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                95   6e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   2e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       31   1.0  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.0  
SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)                 30   1.8  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    30   1.8  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.4  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.4  
SB_324| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.1  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   7.3  
SB_34688| Best HMM Match : Zip (HMM E-Value=9.8e-08)                   28   9.6  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   9.6  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  114 bits (274), Expect = 9e-26
 Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +1

Query: 259 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 438
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 439 TREHALLAFTLGVKQLIVGVNK--MVPLNHHTVSP 537
           TREHA+L  +LGV QLIV +NK  MV L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  105 bits (252), Expect = 4e-23
 Identities = 48/114 (42%), Positives = 71/114 (62%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 436 QTREHALLAFTLGVKQLIVGVNKMVPLNHHTVSPDLRKSRRKYPSYIKKIGLQP 597
           QTREHA+LA T GVK L++ VNKM             + + K   ++KK+G  P
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 18/42 (42%), Positives = 29/42 (69%)
 Frame = +2

Query: 128 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREXG 253
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 95.1 bits (226), Expect = 6e-20
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = +2

Query: 44  MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 190
           M KEK HINIV IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 366
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 188 MGKGSFKYAWVLDKLKAEREXG 253
           MGKGSFKYAWVLDKLKAERE G
Sbjct: 1   MGKGSFKYAWVLDKLKAERERG 22


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 537 RFEEIKKEVSFIHQEDWATTQLLSLSCPISGMA 635
           RF++++ E    H+E W+  +   ++CPI  MA
Sbjct: 181 RFDKLQTETEIPHEERWSEAREAHVTCPIDPMA 213


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 310 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 489
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 490 VGVNKM 507
           +  NK+
Sbjct: 123 ILQNKI 128


>SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)
          Length = 212

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 624 SGMAPGNNMLEPFNQNALGXQGMGRWSVKEGQKLDGK 734
           S  +P +   +  N  A G Q +G W+V+EG  LD K
Sbjct: 8   SNRSPVDVAFDVVNLRAFGFQKVGYWNVEEGLHLDNK 44


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  MGKEKTHINIVXIGHVDSGKSTTTGHLIYKCG 139
           M K+    N+  I HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 585 WATTQLLSLSCPISGMAPGNNMLEPFNQNALGXQGMGRWSVKEGQK 722
           W    LL L+  +     G +  +  + N  G +G G+W  KEG++
Sbjct: 2   WKIAFLLLLAICLQVTLAGRHKADDHHGNRRGGKGSGKWGEKEGEE 47


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 396
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_34688| Best HMM Match : Zip (HMM E-Value=9.8e-08)
          Length = 218

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = +1

Query: 451 ALLAFTLGVKQLIVGVNKMVPLNHHTVS---PDLRKSRRKYPSYIKKIGL 591
           A LAF LG    I+ ++++VP  H +++   PDLR+  R    YI+++GL
Sbjct: 30  ATLAF-LGGMVAIMLIDRLVPNPHDSLTTDDPDLREHNR---DYIRRVGL 75


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +3

Query: 471  RCQTAHRRSKQNGSTEPPYSEPRFE---EIKKEVS--FIHQEDWATT 596
            +C TA  R    GS++ PY E + +   E ++EVS  ++H E ++ T
Sbjct: 3855 KCSTAKPRCASCGSSKEPYKEDKAKHSVEAQQEVSTGYVHCETFSLT 3901


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 730  PSSFCPSFTLHLPIP 686
            PS F PSFT HLP P
Sbjct: 1465 PSPFVPSFTAHLPRP 1479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,564,450
Number of Sequences: 59808
Number of extensions: 529589
Number of successful extensions: 1470
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)