Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0484
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   6.3  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  28   6.3  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   8.4  

>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 345 TACWMRERINGGMFVYAFTAACFHR 419
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 237 APAWRDFVHTNELQMEEAVKVFR--VLYYAKDFDVFMRTACWMRERINGGMFVYAFTAAC 410
           AP   +  +T E + E   K      L+  ++F+V   T C + ER N      + +  C
Sbjct: 44  APLSSELYNTKEPENESIDKHSESLCLFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVC 103

Query: 411 FHRTD 425
           F+  D
Sbjct: 104 FNHED 108


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 453  YEIYPYFFVDSHVISKAFI*R*LKPPRTRSSGNT 554
            +++YP F++D+H+ +KA +    K P T    NT
Sbjct: 1787 HDVYPQFYLDTHLTNKAVLEAVDKIPYTGGWTNT 1820


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 391 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 483
           +LLLP      +A   T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,841
Number of Sequences: 59808
Number of extensions: 376198
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)