Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0484
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    37   0.060
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    32   2.3  
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     32   2.3  
AM080052-1|CAL04198.1|  103|Homo sapiens immunoglobulin heavy ch...    30   9.1  

>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 37.1 bits (82), Expect = 0.060
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 352 AG*EKGSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMS 492
           AG    S+   +S+ L PR S+  T R+S CP +  ++P S+ +A S
Sbjct: 63  AGMRPASSATAASSQLEPRVSSPKTIRISVCPAMRNNMPCSAFSAKS 109


>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like
           protein rA9 protein.
          Length = 1649

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -3

Query: 449 SGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLEL 270
           +G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+
Sbjct: 28  AGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEV 86

Query: 269 VG 264
            G
Sbjct: 87  AG 88


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -3

Query: 449 SGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLEL 270
           +G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+
Sbjct: 33  AGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEV 91

Query: 269 VG 264
            G
Sbjct: 92  AG 93


>AM080052-1|CAL04198.1|  103|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 103

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 377 SVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHL--ELVGVDEVSPRGSMPILYISMNCL 204
           S+   S   ++P + +E +S +  S+D DGF +    L G   +S   S   LY+ MN L
Sbjct: 33  SIYAMSWVRQAPGKGLEWVSSISPSDDSDGFTYYADSLKGRFAISRDNSKNTLYLQMNSL 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,924,033
Number of Sequences: 237096
Number of extensions: 1745837
Number of successful extensions: 3220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3220
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)