Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0484
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   1.7  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    29   3.0  
At4g36480.1 68417.m05180 aminotransferase class I and II family ...    28   6.8  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 446  GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 324
            G+ ET++ G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 485 AVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS-HPARSPHENIEVLSVVE 309
           AVN   G D +R  ++  +  G  ++    + DE  +  P S     + HE+ E    VE
Sbjct: 197 AVNNNFGSDPIRRPEIREIKTG--KSLRVYNDDEPLAYSPVSLAQINTIHESDEN-DDVE 253

Query: 308 DSEDFDGFFHLELVGVDEV 252
           D +DF GFF    +  D V
Sbjct: 254 DDDDFPGFFRDSSITSDMV 272


>At4g36480.1 68417.m05180 aminotransferase class I and II family
           protein similar to Serine palmitoyltransferase 1 (EC
           2.3.1.50) from Homo sapiens [SP|O15269], Mus musculus
           [SP|O35704], Cricetulus griseus [SP|O54695]
          Length = 482

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 278 LELVGVDEVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAISLMSSNM 123
           LE  GV    PRG    + + ++C  T    +L    S+LYS  +S M S +
Sbjct: 136 LEKYGVGSCGPRGFYGTIDVHLDC-ETRISKFLGTPDSILYSYGLSTMFSTI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,219
Number of Sequences: 28952
Number of extensions: 260811
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)