Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0483
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 35 0.044
11_06_0289 - 21969248-21973516 33 0.18
11_06_0185 + 21018045-21022307 33 0.18
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 30 1.6
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 3.8
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 28 6.7
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 28 6.7
07_03_1364 + 26044559-26044672,26045732-26046334 27 8.8
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 27 8.8
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 27 8.8
05_01_0242 + 1804183-1806096 27 8.8
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 8.8
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 27 8.8
>07_01_0463 + 3502708-3503535
Length = 275
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +1
Query: 319 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 489
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238
Query: 490 YKAIEDR*P 516
K IE P
Sbjct: 239 EKGIEHNKP 247
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 352 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 501
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 352 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 501
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 288 QDRGGVPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPSQG 431
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAED--DKRDEGDGERDAREDKERREGDSQG 77
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 313 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 447
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 364 AKMETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 486
A+ E++ K + N S L++H++ +EKT +T Q++ E
Sbjct: 83 AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +1
Query: 349 KEALDAKMETHEEKREAYINELRSRLK--DHLEGVEK--TRLTLEQQTAEVYKAIEDR*P 516
K+ L+AK+ E+KR + + + +SRL D L K L +++ E+ +E R
Sbjct: 98 KKRLEAKLVAAEQKRLSLLAKEQSRLAKLDELRQAAKNDAELRFKKEREELGMKVESRVR 157
Query: 517 QLADKARREPSRRMNRASARNIEXTSF 597
Q +K + R R +A T +
Sbjct: 158 QAEEKRTQLMHARSQRRAALEERTTKY 184
>07_03_1364 + 26044559-26044672,26045732-26046334
Length = 238
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -1
Query: 289 WPSXEQWRPSY 257
WPS E+WRP Y
Sbjct: 68 WPSYEEWRPEY 78
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 264 GRHCSXDGQD---RGGVPHPQRADE*LHRRHQGGSRRQDGDP 380
GRH GQ RGG PH QRA R GG Q G P
Sbjct: 16 GRHGIAGGQGHLPRGGAPHRQRAAS----RGGGGEDGQQGKP 53
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Frame = -2
Query: 156 GTPTGSAXITSYARPPFDISWQR---ISVALVSTSMAST-----FNRQRLRNSXIASD 7
G+PTGS Y R +IS +R +S AL S + FNR LRN I D
Sbjct: 542 GSPTGSCPKRDYRRDCQNISSERELVLSEALQGISSLESAESVCFNRNELRNREILDD 599
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 496 PCTLPRSAVPGSTWSSQRPQDDP*DGSAAR 407
P T R+ +P ++RP+ DP G +AR
Sbjct: 23 PATSHRNKIPADPSRTERPRPDPGSGDSAR 52
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 328 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 435
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +1
Query: 349 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIE 504
KEA A++ EE+++ + E L++ + +E ++ + TAEV++ ++
Sbjct: 259 KEAEKAEVLKEEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQ 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,377,925
Number of Sequences: 37544
Number of extensions: 247916
Number of successful extensions: 860
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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