Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0483
         (610 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    29   0.16 
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   3.3  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   3.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.4  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 0.16
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 285 GQDRGGVPHPQRADE*--LHRRHQGGSRRQDGDPRGKTRGLHQR 410
           G  + GV  PQ++ +    HR+HQ    +Q+G  + +  G+HQ+
Sbjct: 251 GNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQ 294


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 385 EKREAYINELRSRL--KDHLEGVEKTRLTLE-QQTAEVYKAIEDR*PQLADKARREPSRR 555
           ++ + Y  EL+  +     L+   K  L  E QQ+ EV +  E R  Q  D+A  E S+ 
Sbjct: 243 QRFDNYKRELKETMIRNQQLQRQRKQELIAEEQQSLEVIEG-EMRRQQEQDRAALEASKE 301

Query: 556 MNRASA 573
           M R +A
Sbjct: 302 MRRKNA 307


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 387 KTRGLHQRAA-LPSQGSS*GR*EDQVDPGTADRGSVQ 494
           +TR + +R   LP +G+  G       PGT DR S+Q
Sbjct: 2   ETRSMRKRTTRLPEEGAPTG-----AGPGTGDRASIQ 33


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 361 DAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVY 492
           DAK++ HE+ R     E+    K  + GV    + + Q T + Y
Sbjct: 496 DAKIDKHEDARRKKKQEVVELFKLEVPGVYDRMINMCQPTHKRY 539


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,177
Number of Sequences: 2352
Number of extensions: 8275
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59291487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)