Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0483
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41650.1 68415.m05146 expressed protein                             30   1.0  
At1g40133.1 68414.m04768 hypothetical protein                          30   1.4  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   3.2  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    29   3.2  
At1g67230.1 68414.m07652 expressed protein                             28   4.2  
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    28   5.6  
At5g61040.1 68418.m07660 expressed protein                             27   7.4  
At3g24260.1 68416.m03047 hypothetical protein                          27   9.7  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    27   9.7  
At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    27   9.7  

>At2g41650.1 68415.m05146 expressed protein 
          Length = 66

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 424 LKDHLEGVEKTRLTLEQQTAEVYKAIEDR*PQLADKARREPSRRMNR 564
           LK+ LE +E  +  L+  + E    +E R   +A KAR E  RRM +
Sbjct: 19  LKEFLESLEALKADLKTLSKEELLELEKRLKNVARKAREELERRMEQ 65


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +1

Query: 322 QTNNFIVATKEALDAKMETHEEKREAYINELRS-RLKDHLEGVEKTRLTLEQQTAEVYKA 498
           + NN   A  +A  AKME  E +REA++N+  + ++ +     +      ++  AE    
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNKANAIKMAELNLRADSEVFRFKRMLAEARGL 533

Query: 499 IEDR*PQLADKARREPSR 552
            +    + +  ARRE S+
Sbjct: 534 RDSEVARASQTARRETSK 551


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 345 HQGGSRRQDGDPRGKTRGLHQRAALPSQGSS*G 443
           HQGG+ R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
 Frame = +1

Query: 349 KEALDAKMETHEEKREAYINEL------RSRLKDHLEGV-------EKTRLTLEQQTAEV 489
           KE  +  ++  ++K E   +EL      R R+KD LEGV            +L+++  E+
Sbjct: 489 KERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELKESSVKNQSLQKELVEI 548

Query: 490 YKAIEDR*PQLADKAR 537
           YK +E    +L ++ +
Sbjct: 549 YKKVETSNKELEEEKK 564


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 337 IVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQ-TAEVYKAIEDR* 513
           +   ++ALD K+E H+EK     N+   RLK  + G EK   + E+    E  K +ED+ 
Sbjct: 392 VAKREQALDRKLEKHKEKE----NDFDLRLKG-ISGREKALKSEEKALETEKKKLLEDKE 446

Query: 514 PQLADKARREPSRRMNRASARNI 582
             L  KA  E     N+A    I
Sbjct: 447 IILNLKALVEKVSGENQAQLSEI 469


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -2

Query: 540 SSRFVGQLWSSIFDGLVHFRGLL-----FQGQ-PGLLNALKMILE 424
           ++RF G++ +  FDG+ H + LL     F+G  P  L  L M+LE
Sbjct: 151 NNRFTGEIPADAFDGMHHLKKLLLANNAFRGSIPSSLAYLPMLLE 195


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 316 SEQTNNFIVATKEALDA-KMETHEEKREAYINELRSRLKDHLEGVEKTR 459
           S   ++F V  +E LD   +E  EEK   ++NE+  +L   +  VEKT+
Sbjct: 521 SHHKDDFKVQEQELLDLIGIEDEEEKSSDFVNEMEKQLIKQI--VEKTK 567


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 427 KDHLEGVEKTRLTLEQQTAEVYKAIEDR 510
           KD +E   K RL  +Q+  E+ KAIE+R
Sbjct: 81  KDDVERKMKDRLEAKQKLTELLKAIEER 108


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = +1

Query: 346 TKEALDAKMETHEEKREAYINELRSRLKDH---LEGVEKTRLTLEQQTAEVYKAIEDR*P 516
           T+  L+ K+E  +++R+    EL S+ KDH   LE V + +    +  AE+ +  +++ P
Sbjct: 196 TESDLNQKLEDVKKERDGLEAELASKAKDHESTLEEVNRLQGQKNETEAELEREKQEK-P 254

Query: 517 QLADKARREPSRRMNRASARN 579
            L ++        + + +A N
Sbjct: 255 ALLNQINDVQKALLEQEAAYN 275


>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 528 VGQLWSSIFDGLVHFR----GLLFQGQPGLLNALKMILETGA 415
           +G  W+ +     H+      LLF G+P  L  LK+I +TG+
Sbjct: 227 IGVAWTPLLSQDNHYTTGPADLLFNGKPTGLKGLKLIFDTGS 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,317
Number of Sequences: 28952
Number of extensions: 172664
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)