Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0480
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.24 
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   3.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   5.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.3  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.3  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   7.0  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +3

Query: 396 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 485
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 406 MKHTDLEDSVMRNLNASITQYPVDKN 483
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 539 SGDWAITAAIPSTCCSPEIMTASXRLHETRPLHRGATNG 655
           SG  +  ++IPS C  P + ++    H  + ++  + NG
Sbjct: 304 SGPLSTASSIPSNCSCPSVKSSGPSYHAEQEVNVNSYNG 342


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 459  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 355
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +2

Query: 461 LNIR*TRTSRRPLI-------SYNRLTMLRYK-QSGDWAITAAIPSTCCSPEIMTASXRL 616
           LNI  T T+ RP I        YN L +L  K  SG   I +A P TC    I   + RL
Sbjct: 428 LNIILTETTIRPRICAAYQKLEYNILVLLNEKPSSGSQLILSASP-TCTIENIYIENTRL 486

Query: 617 H 619
           H
Sbjct: 487 H 487


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 509 NRLTMLRYKQSGDWAITAAIPST 577
           NRLT   +  +G W +TA++  T
Sbjct: 573 NRLTSFDFSDTGRWLVTASLDGT 595


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 247 ELVEVLIGEVHVRIRVYFSPDAN 179
           E++E   GE  + +R++F+P+A+
Sbjct: 81  EVIETGWGEFDIMVRIFFAPEAH 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,063
Number of Sequences: 5004
Number of extensions: 55553
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)