Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0480
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 58 8e-09
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 44 2e-04
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 43 2e-04
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 41 0.001
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 40 0.002
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 34 0.15
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 33 0.20
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 32 0.45
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 30 1.8
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_15163| Best HMM Match : VAR1 (HMM E-Value=3.1) 29 5.6
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 28 9.8
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 28 9.8
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 58.0 bits (134), Expect = 8e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
CCGA KEN CM+I F + LLI+ E+A + GY+ ++ + ++ +I +YP KN
Sbjct: 425 CCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYP--KN 482
Query: 484 VQKTIDIIQQTY 519
+ ID +Q +
Sbjct: 483 NKAAIDAMQMDF 494
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 55.6 bits (128), Expect = 4e-08
Identities = 25/72 (34%), Positives = 45/72 (62%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
C GA++EN C++ FSV L IIF +LA+G+ ++ +E ++ L ++T+Y + +
Sbjct: 65 CIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTAVTKYRDNAD 124
Query: 484 VQKTIDIIQQTY 519
+Q ID +QQ +
Sbjct: 125 LQNLIDGVQQEF 136
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
CCGA KEN CM+I F FLL++ + E+ G Y +E+ + +++ +I YP KN
Sbjct: 72 CCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDILKAIENYP-GKN 130
Query: 484 VQKTIDIIQQTY 519
+K+I+ +Q +
Sbjct: 131 -EKSINDMQTKF 141
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 89 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENF 238
MAL+G + VK L+ FN +F + GLI+ VGI A Y+ N+
Sbjct: 1 MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVNY 50
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY 468
CCGA+KE+ C++ TF L II E+ GY+ +E+ + +++N +I Y
Sbjct: 344 CCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLGKDMNDTIVSY 398
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/70 (22%), Positives = 38/70 (54%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
C +KEN +++++ + L++IF+ E+A G+ + +++ + + + +Y
Sbjct: 78 CVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYELEVGIRGKMNRYGFTDA 137
Query: 484 VQKTIDIIQQ 513
V K ID +Q+
Sbjct: 138 VTKAIDDLQK 147
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
C GA+KEN + ++ +F+ + +A G+ +++ L D R L + Y D +
Sbjct: 91 CVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKLVDPKAR-LEDGLKSYQQDSS 149
Query: 484 VQKTIDIIQQTY 519
Q+ ID IQ +
Sbjct: 150 KQEFIDFIQTRF 161
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
CCGA+KE+ CM+ T+ + IF E+ + Y+ +E ++ ++ +++ +Y + +
Sbjct: 77 CCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRSTMNEYHLSGH 136
Query: 484 --VQKTIDIIQQTY 519
V + ID I + +
Sbjct: 137 DAVTRAIDEIHRDF 150
Score = 37.9 bits (84), Expect = 0.009
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 89 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGI 187
M+ + G C+K+++F FNLLF + G I +G+
Sbjct: 1 MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGV 33
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 405
C GA KEN CM+ TF V LLI+ E+A + Y
Sbjct: 74 CLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAY 107
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 101 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEI 199
G +K L+ FN+LF I G+ ++ VG AE+
Sbjct: 7 GAGRILKILVVFFNVLFFIFGIALIAVGAWAEV 39
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY--PVD 477
C GA++EN C++ + II + G G+ LE V L +I Y P
Sbjct: 122 CIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDAIVLYRDPTK 181
Query: 478 KNVQKTIDIIQ 510
++ ID +Q
Sbjct: 182 GDLHLIIDTVQ 192
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 113 CVKYLMFCFNLLFAITGLIILIVGI 187
CVKY +F N++F + G +IL VGI
Sbjct: 59 CVKYSLFTINVIFWLAGAVILAVGI 83
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
C GA++EN C + + + + + +A G Y + D ++ L + +Y D
Sbjct: 96 CVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQ-KDKVQALKERLKQDLKKYLDDPL 154
Query: 484 VQKTIDIIQ 510
Q ID +Q
Sbjct: 155 NQDLIDFMQ 163
Score = 32.7 bits (71), Expect = 0.34
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 113 CVKYLMFCFNLLFAITGLIILIVGI 187
C KY +F N++F I GL+++ VG+
Sbjct: 27 CTKYTLFFINVIFFILGLLVMTVGV 51
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 33.5 bits (73), Expect = 0.20
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +2
Query: 110 SCVKYLMFCFNLLFAITGLIILIVG 184
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
Score = 31.9 bits (69), Expect = 0.60
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY--PVD 477
C GA++EN ++ + + + + ++ GIA YM +D V+ L + Y P
Sbjct: 100 CIGALRENTILLAIYGGAVTLCLIFLVSAGIAVYMH----QDKVVEKLKDDLKHYRDPDK 155
Query: 478 KNVQKTIDIIQ 510
+N Q ID +Q
Sbjct: 156 ENFQFLIDRLQ 166
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 33.5 bits (73), Expect = 0.20
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +2
Query: 110 SCVKYLMFCFNLLFAITGLIILIVG 184
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 340 ITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYP 471
+ F V L ++F+ EL I GY+ ++++ + L+ ++ YP
Sbjct: 130 LQFGVILGLLFLVELGTAITGYIFRSEIKTGLSDGLDTALKDYP 173
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 104 GMSCVKYLMFCFNLLFAITGLI 169
GM C+KYL+F FN +F + +I
Sbjct: 76 GMQCMKYLLFAFNFVFWCSKII 97
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 304 CCGAVKENHCMIITFS 351
CCGAVKEN C ++ S
Sbjct: 217 CCGAVKENKCFLLLVS 232
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 304 CCGAVKENHCMIIT 345
CCGAVKE+ CM+ T
Sbjct: 332 CCGAVKESRCMLAT 345
>SB_15163| Best HMM Match : VAR1 (HMM E-Value=3.1)
Length = 354
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Frame = +1
Query: 403 YMKHTDLEDSVMRNLNASITQYPVDKN-VQKTI--DIIQQTYN 522
+++HT +D + N+N + Q+ ++++ +Q TI D++Q T N
Sbjct: 142 FLQHTINQDLLQHNINQDLLQHTINQDLLQHTINQDLLQHTIN 184
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 201 FISALMPTIRMINPVMANRRLKQNMRYF 118
FI+ALM I +I +M + L++ M YF
Sbjct: 39 FITALMGNIILITVIMKTKSLRRTMNYF 66
>SB_38522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 839
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 193 SPDANYQDDQSRNGKQKIEAKHEVLYTG---HSTFESHC 86
SP ++ RNG+ K+E+ YTG H+ +SHC
Sbjct: 22 SPLHAHKQSHCRNGEPKVESNKVQYYTGSPLHAHKQSHC 60
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 307 CGAVKENHCMIITFSVFLLIIFVAELAVGI 396
C + N C++ T+ F+LI+ VAE+ + +
Sbjct: 38 CALLYMNPCLLKTYFSFMLILVVAEVTIAV 67
>SB_43317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 214 VRIRVYFSPDANYQ---DDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIKY 71
+ + +Y + ++ Y+ D+ R GK ++ +KH Y + + CY + Y
Sbjct: 56 LHLHLYDNRESEYRKRIDELEREGKWRLHSKHVTDYNKYIPARAKCYLLTY 106
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 46 SVVIQFGGNI*LNNNGSRRWNVLCKVPHVLLQSSVCHYGIDHPD-SWHQG*NKLVSLHEL 222
+V + GN+ + + GSR W++ +PH L IDH D +W V+LH++
Sbjct: 127 AVALDMRGNVVVFHRGSRAWDLKFYMPHGLT--------IDHEDNTWITD----VALHQV 174
Query: 223 HR 228
H+
Sbjct: 175 HK 176
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 430 SVMRNLNASITQYPVDKNVQKTIDIIQQTYNAAV 531
+++ NL IT Y D++ ++I +TY AV
Sbjct: 1050 ALLVNLGKKITDYTFDRDYSNDDEVIDETYGVAV 1083
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,414,005
Number of Sequences: 59808
Number of extensions: 430558
Number of successful extensions: 1110
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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