Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0480
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 54 9e-08
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 35 0.075
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 33 0.23
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 32 0.40
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 31 0.92
U40958-1|AAA81761.1| 165|Caenorhabditis elegans Hypothetical pr... 31 0.92
U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 29 2.8
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 29 4.9
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 29 4.9
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 6.5
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 54.4 bits (125), Expect = 9e-08
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
CCGA++EN+C+ ++F+V L ++ E+A I GY H + L + +Y +
Sbjct: 71 CCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRG 130
Query: 484 VQKTIDIIQQTY 519
V+ D Q +
Sbjct: 131 VESAWDKTHQLF 142
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 95 LEGGMSCVKYLMFCFNLLFAITGLIILIVG 184
+EGG++ VKYL+F NL+ + GL ++IVG
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 483
C G+++EN + +S L ++ +AE + G+ Y L++ + LN + Y D +
Sbjct: 103 CVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVGYRDDPD 162
Query: 484 VQKTIDIIQQTY 519
+Q ID +Q+T+
Sbjct: 163 LQLLIDSMQETW 174
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 113 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 220
CVKY +F FN++F + G +L+ G+ A+I ++N
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 34.7 bits (76), Expect = 0.075
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 304 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-TQYPVDK 480
C GA K N C + F L++ F ELA + + K ++ V ++ +I +Y +
Sbjct: 75 CIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSET 134
Query: 481 NVQKTIDIIQQTY 519
+ D +Q+ +
Sbjct: 135 AFKDAFDTVQEKF 147
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 86 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 220
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 307 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 465
CGAV + +++ F +FL+ F+A++A+G + + D SV N+ + T
Sbjct: 46 CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104
Query: 466 YPVDKNVQKTIDIIQ 510
P +K V + ID +Q
Sbjct: 105 EPENKMVTEFIDKLQ 119
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 106 STFESHCYSIKYYRQIVLLRNKMIHTSANKAH 11
+TF S C S K ++ + NKM+H +A+ AH
Sbjct: 1941 ATFRSDCISQKISHRLYRIVNKMVHNNADIAH 1972
>U40958-1|AAA81761.1| 165|Caenorhabditis elegans Hypothetical
protein F09F9.2 protein.
Length = 165
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 562 SRDRPVAGLFIPQHCKSVV*YQWSSGRSCLPDIE*WKRSGCA*PNLPSPYASCNQ 398
S+ RP+ + P+HCK V Y + G + D+ W S CA + P A+C +
Sbjct: 103 SKGRPL--ILDPKHCKQVEHYSKTYG---VKDVPAWVASNCAFAKMYLPGATCEE 152
>U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical
protein T22B7.7 protein.
Length = 393
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 109 HSTFESHCYSIKYYRQIVLLRNKMIHTSANKA 14
H T SH Y + YR I+ LR K+ TS NKA
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENKA 173
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 310 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 435
GAV + ++ + +F++I+F+ E+A+GI +K + +V
Sbjct: 91 GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 316 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 492
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 493 T 495
+
Sbjct: 59 S 59
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 316 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 492
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 493 T 495
+
Sbjct: 59 S 59
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 337 IITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQQT 516
+IT+ V ++++ E+ G+A ++ L D+ ++A T N + IIQ
Sbjct: 101 MITYLVLIIVLVSLEIGCGVAVLVRRNSLHDNTNSLIDAMYT-----TNSVNDLKIIQDK 155
Query: 517 YN 522
YN
Sbjct: 156 YN 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,691
Number of Sequences: 27780
Number of extensions: 319054
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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