Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0478
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.2  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   5.6  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    26   5.6  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   7.4  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    25   9.8  

>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 38  VYKKIHYFYDARGVKYQPGIPVLGNILKSSLGTG-HFWEDIDKIYKAF 178
           ++KKI Y +      + P   +  NILK   GT     ED+D++Y  +
Sbjct: 497 IFKKICYLWLFLYCPFTPFQILFSNILKMEKGTSDEKIEDLDRMYSLY 544


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 181 W*EVHRLYRRHNSDIDDQRP*DHQNITVR 267
           W +   +YR+HN +I    P  H N+ +R
Sbjct: 830 WYDHKVIYRQHNENITLSAPLTHINVAIR 858


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 445 KNIVEYLKGHQLEDVDVDD 501
           KN+ +Y +G++L+DVD +D
Sbjct: 374 KNLDDYGEGNRLDDVDAED 392


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 295 LYGSRNGRSLSL*CFDDLRVFDHQYRS 215
           +Y   NGR L +  FD++R++D Q ++
Sbjct: 448 VYSMPNGRHLVISSFDNIRLYDLQSKA 474


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 368 SRHLSSFIMKRLPPNKASISTGKNSLWFTKWSKSLTVMF 252
           ++ L S ++K  PP++ ++    +  WF + S  LT ++
Sbjct: 394 AKDLISNLLKTNPPDRFTVKQCLSHPWFARHSSRLTKLY 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,155
Number of Sequences: 5004
Number of extensions: 55720
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)