Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0476
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.42
01_01_0613 - 4571689-4572348 29 3.0
06_03_1448 + 30235336-30236763 29 3.9
06_03_1443 + 30182018-30183445 29 3.9
06_03_1440 + 30166515-30167942 29 3.9
06_03_1437 + 30151030-30152457 29 3.9
06_03_1429 + 30100834-30102261 29 3.9
06_03_1425 + 30084383-30085810 29 3.9
06_03_1420 - 30053713-30055140 29 3.9
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.9
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 3.9
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.2
07_03_0837 + 21870106-21870509,21870601-21870778 28 6.9
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 6.9
09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455 27 9.1
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 9.1
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 225 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 103
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>01_01_0613 - 4571689-4572348
Length = 219
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 283 LALGHLRYSLQMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 107
L LGH YSL + P P + N ++ ++S SA + +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGN--NDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 230 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 93
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 158 TTLHAWNETPCARRYY 111
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 166 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 255
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 245 PPQSNSPPGSVLEPDHAGVLNGDE 174
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>07_03_0837 + 21870106-21870509,21870601-21870778
Length = 193
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 223 GGEFDW--GGTSVKNNAGVLRPAQRGQKPRVEQKGKSWLDPDVQYA*GLRKHG 375
G E W +++ A R RG++ V + G +WL G +HG
Sbjct: 5 GAEATWCEEASALATEAAAARAGARGRRGEVAEVGATWLKRSAMVEVGATRHG 57
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 122 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 244
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>09_04_0681 + 19416207-19416515,19416537-19416756,19416848-19417455
Length = 378
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -3
Query: 374 PCFRSPYAY*TSGSSQLLPFCSTRGF-CPR*AGLRTPALFFTDVPPQSNSPPGSVLEP 204
PC+ +PY + G + PF GF P +R+ + PP PP +P
Sbjct: 315 PCYYAPYYHHGGGVAPTRPFAGAAGFHAPPAVSVRS-VIPVCAAPPSPRPPPRKEDDP 371
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 240 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 118
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,226,805
Number of Sequences: 37544
Number of extensions: 373573
Number of successful extensions: 1004
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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