Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0476
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    31   0.88 
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 163 WRKRSSPFKTPA*SGSRTLPGGEFDWGGTSVKNNAGVLR-PAQRGQKPRVEQKGKS 327
           W+K     KTPA SG+ T         GTS ++ AGV   P+ R Q       GK+
Sbjct: 611 WKKFRQTQKTPAPSGASTSGASTSKPSGTSPESGAGVCTGPSTRSQSITSVASGKT 666


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 145 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 11
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 275 RTPALFFTDVPPQSNSPP-GSVLEPDHAGVLNGDERFRHVTTLHAWNETPCAR 120
           R+P    T +P   N  P  S +E     + +  ERFR   TL   N+T  AR
Sbjct: 35  RSPTPKPTPIPVLINDTPVASEIEQVEKELAHSSERFRKPKTLSVTNDTESAR 87


>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 255 YRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVR 124
           +R ++P    AW   R G  G F + R   P    AR  +  VR
Sbjct: 52  FRSSSPTPQSAWAPNRQGFGGQFSKWRTSTPMTTPARYPQQAVR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,102,681
Number of Sequences: 27780
Number of extensions: 291735
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)