Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0475
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.73 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.0  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 617 VYVLRDICTTXQ*VTNCLRXLTSNVLLMVNINVAN 513
           +++L  IC      +NCLR      LL+V ++  N
Sbjct: 329 IFILYFICDEAHYASNCLRVQFQKKLLLVELSWMN 363


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 116 YYRPRTASAQPSK 78
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 41  SSLKNHYFHCXITYSVGRK 97
           SS    +FHC      GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 94  PPNRVSNXTMKVVVFQRRSRE 32
           PPN  +N    VVV    +RE
Sbjct: 226 PPNTENNCAQPVVVIMSPTRE 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,398
Number of Sequences: 336
Number of extensions: 2475
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)