Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0475
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   0.78 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.7  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -1

Query: 361  SPYAY*TSGSSQLXPFXSTRGF-----CPR*AGLRTLRYSL 254
            SPYA+ T  S+ L PF STR +      P+   LR LR+ L
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSYMGAIPTPQLLDLRALRHGL 1251


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 425  NXXGTSX*KLFILKDR*AVLSQSL 354
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,797
Number of Sequences: 5004
Number of extensions: 39277
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)