Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0475
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    30   1.2  
At1g08380.1 68414.m00927 expressed protein                             29   2.7  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    29   3.6  
At3g62370.1 68416.m07006 expressed protein                             28   6.3  
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa...    28   6.3  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 145 LGTKHRAPADIIDRAPLPPNRVSNXTMKVVVFQRRSRETISHLCYTS 5
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVS 275


>At1g08380.1 68414.m00927 expressed protein
          Length = 140

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 459 PLAATSQLSXW*LXWHLXLKTLYTKGSIG 373
           P A TSQ   W + WHL L    T G IG
Sbjct: 103 PPALTSQFWLWLVTWHLGLFLCLTFGQIG 131


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 160 SPLCTLGTKHRAPADIIDRAPLPPNRVSNXTMKVVVFQRRSRETIS 23
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 233 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 138
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 872

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 LALGHCVILYRCTAPVKLPAWQCP 211
           L  GHCV  Y+C   +K    +CP
Sbjct: 834 LPCGHCVSCYQCGTKIKRTKGRCP 857


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,181,709
Number of Sequences: 28952
Number of extensions: 221285
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)