Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0474
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 32 0.076
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.076
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.076
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 30 0.40
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.71
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.71
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.71
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 29 0.94
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.94
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 29 0.94
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 0.94
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.6
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 2.2
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.2
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.9
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 2.9
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 27 3.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.0
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 5.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.0
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.0
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 5.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 8.7
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 8.7
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 25 8.7
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 8.7
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 32.3 bits (70), Expect = 0.076
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Frame = +1
Query: 226 ETGNRS*SENEEKVPEAKSSEI--PDAEAKSADIKVE---EPAAQPEDSKTEVQATVAEI 390
E+ + S SE+ E+ E++ SE+ P +A +A E E + + E++++E + V++
Sbjct: 46 ESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDE 105
Query: 391 SKEEKPSATDAEGSADS 441
S+ E S +++E ++S
Sbjct: 106 SESESESESESEEESES 122
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 ENEEKVPEAKS-SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 426
E+E +VP+ K+ + D+E+ S + EE EDS+ ++ S+ E +++E
Sbjct: 64 ESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESE 123
Query: 427 GSADSA 444
+D +
Sbjct: 124 EESDES 129
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 247 SENEEKVPEAKSSEIPD---AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSAT 417
SE EE+ + SE+ D +E++S EE ++ E ++E + + K EK A
Sbjct: 88 SEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFLKKPEKEEAK 147
Query: 418 DA 423
A
Sbjct: 148 PA 149
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.076
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 247 SENEEKVPEAKSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDA 423
S+ +E E K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P
Sbjct: 436 SKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSF 495
Query: 424 EGSADSAAIIPNMVKK 471
A S VKK
Sbjct: 496 PKPASSPVTFSEDVKK 511
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.076
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 319 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 477
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 29.9 bits (64), Expect = 0.40
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 250 ENEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEG 429
EN+E + ++K S+ + E K PE+ E TV EI+ EEK S + G
Sbjct: 211 ENDEILEDSKESKDENEENKETSTTNVAETDAPEE---ETVDTVEEIADEEKHSVKEESG 267
Query: 430 SA 435
A
Sbjct: 268 EA 269
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 250 ENEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEG 429
EN E + + AEA + D + P K V +VAE ++E + ++E
Sbjct: 60 ENTEDISASNVVSAEGAEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESED 119
Query: 430 SA 435
A
Sbjct: 120 KA 121
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 274 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 444
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.1 bits (62), Expect = 0.71
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 205 PRRLRYRETGNRS*SENEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVA 384
P++ R++ + EN V + SS AKS + EPA +P + + ++T
Sbjct: 874 PKKSTQRDSSKKL--ENSTVVSGSPSSSSKSDAAKSIKPQKPEPALKPVEGTADPKSTKR 931
Query: 385 EISKEEKPSATDAEGS 432
+ EK + TD +
Sbjct: 932 NHQETEKTADTDVSST 947
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 173 AIPEAKKD--DIAPEDSDIAKPETVPEVKTKKKSRKQNHPRFPMLKQNLLILKWKN 334
A+ EAKKD + A ++++K +T P+ K KKS K LK ++ L++KN
Sbjct: 51 AVLEAKKDFMESASGTAELSK-KTRPKKKGSKKSSKSELDNEENLKVHIQSLRYKN 105
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 262 FLRFHFRNGFRFRDIGVFWGYIVLF-GLWYSGYLVVT 155
FLRF F + F+ + F+ Y V F GLW+ +L T
Sbjct: 327 FLRFSFLDAFQ-GGVSQFFLYSVFFQGLWFGNHLATT 362
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 28.7 bits (61), Expect = 0.94
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +1
Query: 235 NRS*SENEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA 414
N+ S+NEE + + DA+AK D + E ++ + +AE+ +E K ++
Sbjct: 713 NQDASDNEE-LERKLDKVLEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRERKKAS 771
Query: 415 TDAE---GSADSAAIIPNMVKKIDLAPN 489
+ I+ VK IDL N
Sbjct: 772 NKEKKKNAQETKQQIVQFKVKVIDLIDN 799
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 0.94
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +1
Query: 247 SENEEKVPEAKSSEIPD----AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSA 414
+E + K E S E D ++K + KVEE ++ D K + ++ KEEK
Sbjct: 454 TETDVKAKETDSIEANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEK--- 510
Query: 415 TDAEGSAD 438
TD++ +AD
Sbjct: 511 TDSKETAD 518
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 182 EAKKDDIAPEDSDIAKPETVPEVKTKKKSRKQNH-PRFPMLKQ-NLLILKWKNQLLSLKI 355
+ KK + + KP P++ K+ + K + PR ML+Q L +N LK
Sbjct: 768 KTKKQTELTNSAHVIKPSPTPQITVKQNTTKSSSAPRMGMLEQLKQEYLTKRNFESKLKS 827
Query: 356 QKLKYKLPSLKFQKKKNLV 412
+ + P+ K NL+
Sbjct: 828 SAVSSRKPTFNEVKPANLL 846
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 253 NEEKVPEAKSSEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEG 429
+EE++ +KS IP E +I VEE +P EV+ T A +E+ P D+E
Sbjct: 133 SEEEIITSKSP-IPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEY 190
Query: 430 SA 435
+A
Sbjct: 191 AA 192
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 329 KNQLLSLKIQKLKYKLPSLKFQKKKNL 409
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 250 ENEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTE--VQATVAEISKEEKPSAT 417
++E+ VP +KSS + D S +I + + P ++KTE + V E +P+A+
Sbjct: 528 KSEDSVP-SKSSVLEDKHENSVEIDKKADDSLPSNNKTEGYTPSVVREEKNYSEPNAS 584
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 268 PEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEV-QATVAEISKEEKPSATDAEGSADSA 444
PE S+ E K+AD + + P+DS + + + ++ E+K SA + A A
Sbjct: 123 PEGGSAGPKKDEVKTADADAAKDLSTPQDSSKPIEEKPMPDLGAEQKESAPSSTKPAPDA 182
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 EEKVPEAKSSEIPDAEAKSAD-IKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 432
+ K E+ +E+P K +K ++P ++P + +T+V+ A ++E +P +D +
Sbjct: 218 QTKELESLFAELPTEPPKQTRFLKSQQPTSEP-NVETQVEEQPALENEESEPEPSDDQF- 275
Query: 433 ADSAAIIPNMVKKIDLAPNVE 495
++V+++D+ PNV+
Sbjct: 276 --------DLVEEVDVLPNVD 288
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 214 VFWGYIVLFGLWYSGYLVVTNW 149
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Frame = +1
Query: 247 SENEEKVPEAKSSEIPDAEAKSA----DIKVEEPAAQ------PEDSKTEVQATVAEIS- 393
SE EK E + E +AEA++ + +EEP E +T++++ E S
Sbjct: 394 SEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENNEVVTEKKETDIKSDAVEHSI 453
Query: 394 KEEKPSATDAEGSADSAAIIPNMVKKIDL 480
K+++ S TD AA + V + DL
Sbjct: 454 KDKEDSKTDKVDDIPQAAPAESNVSESDL 482
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Frame = +2
Query: 23 PVAEEKDVVPAQPILEVAPKIDD--SXXXXXXXXXXXXXXXXXXXXSNDEVPAIPEAKKD 196
PVA E VP +P + V P+ E P++P+
Sbjct: 611 PVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAA 670
Query: 197 DIAPEDSDIAKPETVPEVKTKKKSRKQNHPRFPML 301
+ PE + +P VP V ++ + N P P L
Sbjct: 671 PVVPEVPSVPQPPAVPVV---PEAGQLNEPVVPPL 702
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 295 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 441
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 609 SFAHQVKCQQLVSLQDCLLT*EHRLLQ--ES*FQELSSIAFYIRSQVDL 469
S++H KC L+ LLT E++ +Q E + L+ + Y ++ +D+
Sbjct: 26 SYSHHAKCTVAQLLKQNLLTFENQRIQPEEELKENLTKVVNYFQAPIDV 74
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +1
Query: 208 RRLRYRETGNRS*SENEEKVPEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAE 387
RR E+ ++ S++E + PE+K E+KSA+ ++ + EDSK +V++
Sbjct: 588 RRASKHESKHKRDSKHEAR-PESKHES--HRESKSAEKDKKDKKDKKEDSKRSRSHSVSK 644
Query: 388 ISKEEKPSATDAEGS 432
+ + TD G+
Sbjct: 645 PDSSKLRTWTDRTGA 659
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +1
Query: 331 EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAA 507
EP +P+ S T +I+ + + + + GS A++ +++K+ID+ ++ES A
Sbjct: 483 EPFKRPQSSSAPTILT--DINGDFEMALGASGGSRIVTAVLDSIIKRIDMDYDIESMVA 539
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Frame = +1
Query: 250 ENEEKVPEAKSSEIPD----AEAKSADIKVEEPAAQPEDSKTEVQATVAE--ISKEEKPS 411
ENE ++SSEI D A A S K EE + + + E IS E
Sbjct: 88 ENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEESEDEEVYDPARGEGIISTSESSD 147
Query: 412 ATDAEGSADS 441
+DAE ++
Sbjct: 148 ESDAESETEA 157
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = -2
Query: 386 SATVACTSVFESSG*AAGSSTLISADF------ASASGISDDFASGTFSSFS 249
SAT C S ++G +A ++ ++AD +SAS +S + SG+ SS S
Sbjct: 452 SATGTCASYLSAAGSSATNAISLTADSNAVSRNSSASTMSTSYTSGSGSSNS 503
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 212 DSDIAKPETVPEVKTKKKSRKQN 280
+SD++ P+ V +KK S+K+N
Sbjct: 246 ESDVSHPKAASPVASKKSSKKKN 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,556
Number of Sequences: 5004
Number of extensions: 39128
Number of successful extensions: 225
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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