Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0473
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   5.4  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 527 PLREIYFS*IRVVRIRDKCYFHCTLNVR 444
           PL+ +Y   + +    D+CYF   +N R
Sbjct: 153 PLQTVYMQMVDIQESMDRCYFESEVNKR 180


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 145 CLFIV*WGLMIVIFKEKNFK*SIIGRYFSGFFKSLSMSKFAL 20
           C+F+V WG ++ +    N+   I  R   G  +S +   F L
Sbjct: 134 CVFLVIWGFLLCMTSVANYPGFIALRVLLGMMESAASPGFIL 175


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 108 FLKRKTLNNQSLDATSRAFSKVCQC 34
           +LK  TL+ +SL+ +SR F ++ QC
Sbjct: 796 YLKINTLSMKSLNNSSRKFLELYQC 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,200
Number of Sequences: 5004
Number of extensions: 43860
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)