Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0473
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371...    28   5.6  

>03_01_0490 +
           3711009-3711383,3712104-3712202,3713209-3713461,
           3713908-3714090,3714091-3714227,3714511-3714710,
           3714797-3714994,3715109-3715271
          Length = 535

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 294 MSYYLTLSASLDLLKC*LIHRHFFCRIYSFCFCFIAKLKGFLKSS 428
           +++YL + AS DL+   L  +H++  IY   F FIA   GF  +S
Sbjct: 490 VAFYLLVCASYDLV---LGAKHYYLYIYLQAFAFIALGFGFAGTS 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,690
Number of Sequences: 37544
Number of extensions: 241524
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)